View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_21 (Length: 481)

Name: NF11758_low_21
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_21
NF11758_low_21
[»] chr7 (1 HSPs)
chr7 (31-481)||(47374752-47375213)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 31 - 481
Target Start/End: Original strand, 47374752 - 47375213
Alignment:
Q  31 gcagagattcaataaaaacaccatcttcaatactttatatttttaattcacaagcaaaca---------ggtcgagtatttggtcttctcaagtcatgct 121  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  47374752 gcagagattcaataaaaatatcatcttcaatactttatatttttaattcacaagcaaacaccaaagataggtcgagtatttggtcttctcaagtcatgct 47374851  T
Q  122 ctcaaagatatggattgatatgaattagaacatcatgtatcaacgttaatttctctatcatgacaaacgtcttggataaatgcttcttctcgagaaattt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  47374852 ctcaaagatatggattgatatgaattagaacatcatgtatcaacgttaatttctctatcatgacaaacgtcttggataaaagcttcttctcgaaaaattt 47374951  T
Q  222 cctcaacagtgaacaataccgattcaaagaaaacaactcaacgttcgaaggcaccctcgtagacttgaattccttcactaacaaggcaacataaaataag 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47374952 cctcaacagtgaacaataccgattcaaagaaaacaactcaacgttcgaaggcaccctcgtagacttgaattccttcactaacaaggcaacataaaataag 47375051  T
Q  322 ccatcctacttgacaaatcactgcatgtcatagcaag--cacctcgacaacaaaatgttcgttgaggatgatttttgttcttgtcccttgattcaaactt 419  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47375052 ccatcctacttgacaaatcactgcatgtcatagcaagcacacctcgacaacaaaatgttcgttgaggatgatttttgttcttgtcccttgattcaaactt 47375151  T
Q  420 gaaacattttagtcaaagcaaatgattatccatctccaaattacccacattaacggtgcatt 481  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47375152 aaaacattttagtcaaagcaaatgattatccatctccaaattacccacattaacggtgcatt 47375213  T

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