View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_22 (Length: 463)
Name: NF11758_low_22
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 22 - 445
Target Start/End: Original strand, 31613938 - 31614366
Alignment:
| Q |
22 |
aagctacaataggcacttcccaaggaaagaattgatgttgggtgaatttgaatttccagt---gagtttcaatgttgttcacaactgaccttatcttttt |
118 |
Q |
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| T |
31613938 |
aagctacaataggcacttcccaaggaaagaattgatgttgggtgaatttgaatttccagtagtgagtttcaatgttgttcacaactgaccttatcttttt |
31614037 |
T |
|
| Q |
119 |
tgagtgggaccaaaagagtaatgaacttgttcnnnnnnngaatcttagcttcagtttttgtctagttacttgtata--gttttcaaaatacaccatgatt |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31614038 |
tgagtgggaccaaaagagtaatgaacttgttctttttttaaatcttagcttcagtttttgtctagttacttgtataaagttttcaaaatacaccatgatt |
31614137 |
T |
|
| Q |
217 |
gattttctcagagtatttctgttattggatattgatattctagtgtttagacggacatttgtctgctcttttttgttttgttattctattatttttaaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31614138 |
gattttctcagagtatttctgttattggatattgatattctagtgtttagacggacatttgtctgctcttttttgttttgttattctattattttaaaaa |
31614237 |
T |
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| Q |
317 |
acaaaaagatggaatgcttttagtccttctcaaattgctaaatataaggttggttttagtcttttttgtttgagatttaaggattggagtgattagaaaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31614238 |
acaaaaagatggaatgcttttagtccttctcaaattgctaaatataaggttggttttagtcttttttgtttgagatttaaggattggagtgataagaaaa |
31614337 |
T |
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| Q |
417 |
cgagggttcgatccccacccccattgtga |
445 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
31614338 |
cgacggttcgatccccacccccattgtga |
31614366 |
T |
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