View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_23 (Length: 448)
Name: NF11758_low_23
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 12121348 - 12120929
Alignment:
| Q |
19 |
catttatcaccgctctgctgcttgaaaatcacctacttcatgaggagttacctttgtaagatagataaccactgtatgttattaatattacatcaccttg |
118 |
Q |
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| T |
12121348 |
catttatcaccgctctgctgcttgaaaatcacctgcttcatgaggagttacctttgtaagatagataaccactgtatgttcttaatattacatcaccttg |
12121249 |
T |
|
| Q |
119 |
ttcaacatcaactagtgctcgaaaagttgcaaagaatgatcttctcagaatcagaggaccctcttccacatcactaatctccatgaccaccacgtctata |
218 |
Q |
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|||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12121248 |
ttcaacatcaacaagtgctcgaaaagttgcgaggaatgatcttctcaaaatcagaggaccctcttccacatcactaatctccatgaccactacgtctata |
12121149 |
T |
|
| Q |
219 |
agaaacacaaaagtgccaattaataccaaaatgtactttacgatgccaccaaaagtttctaatgtacctttttctaacattgctaagaaattagaggtaa |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||| |
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| T |
12121148 |
agaaacacaaaagtgccaattattaccaaaatgtactttaccatgcgaccaaaagtttccaatgtaactttttctaacattgctaagaagttagaggtaa |
12121049 |
T |
|
| Q |
319 |
cttgtatttctcccatgaggtctatgaacatgttgtatttcttcattcttcccatgagattaaaaatttcatctttttattgcttatttttccctttctt |
418 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
12121048 |
cttgtatttctcccgtgaggtctatgaacatgttgtatttctccattcttcccatgagattaaaaagttcatctttttatcgcttatttttccctttctt |
12120949 |
T |
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| Q |
419 |
ccttttgttggtgtcctatg |
438 |
Q |
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|||||||||||||||||||| |
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| T |
12120948 |
ccttttgttggtgtcctatg |
12120929 |
T |
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