View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_24 (Length: 436)
Name: NF11758_low_24
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 53592726 - 53592299
Alignment:
| Q |
1 |
ttcttctttgtaaagagaagcataggatc-ccaacccaactactcttgatatacttttgtttgttgtaacttgtaagtgatcaatccaatttttattgtt |
99 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592726 |
ttcttctttgtaaagagaagcataggatgtccaacctaactactcttgatgtacttttgtttgttgtaacttgtaagtgatcaatccaatttttattgtt |
53592627 |
T |
|
| Q |
100 |
tgcaggaaattggaaaaagtagatgacaagaagaaagatgtttgtttgatattatcttttagaaggaagcatataggaaacacgcgatacaaccttactt |
199 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53592626 |
tgcaggaaattggaaaaagtagatgacaataagaaagatgtttgtttgattttatcttt--gaaggaagcatataggaaacacgcgatacaaccttactt |
53592529 |
T |
|
| Q |
200 |
gcattgctgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataac |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592528 |
gcattgttgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataac |
53592429 |
T |
|
| Q |
300 |
cactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgt |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592428 |
cactcacctctcctcctgcaatccaaacacattttccatcatgtagcctgacgcaagtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgt |
53592329 |
T |
|
| Q |
400 |
tccgttgggtagctggggccgtctgtgctc |
429 |
Q |
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|| |||||||||| || ||||||||||||| |
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| T |
53592328 |
tctgttgggtagccggcgccgtctgtgctc |
53592299 |
T |
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Back To:
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Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 272 - 429
Target Start/End: Original strand, 23779380 - 23779537
Alignment:
| Q |
272 |
cctagccgccgccaacaacctccataaccactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcc |
371 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
23779380 |
cctagccgccaccgacaacctccataaccactcacctctcctcctccaatccaaacacgtttttcatcatgtagcctcacgcaggtggtgaacgcgctcc |
23779479 |
T |
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| Q |
372 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtctgtgctc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
23779480 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagccggcgccgtatgtgctc |
23779537 |
T |
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