View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_25 (Length: 429)
Name: NF11758_low_25
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Complemental strand, 41038384 - 41037979
Alignment:
| Q |
14 |
cacagaggaagtacaattgtatttaacaaatgatagatgcatagttgtagaccaaacatttagcatctaagagaaattaattaactcaaacatggttaag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41038384 |
cacagaggaagtacaattgtatttaacaaatgatagatgcatagttgtagaccaaacatttagcatgtaagagaaattaattaactcaaacatggt---- |
41038289 |
T |
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| Q |
114 |
catggtctttattttaaaacaaaatcacgtataggtcacacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttg |
213 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038288 |
------ctttattttaaaacgaaatcccgtataggtcacacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttg |
41038195 |
T |
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| Q |
214 |
tagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaaccgtgttggg |
313 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41038194 |
tagttgttttcaattctgaagtgctaattgaccatgaatggatatcatgtgctataccagttactgaagcagcagatagaccaaacctaaccgtgttggg |
41038095 |
T |
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| Q |
314 |
gagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggcatgtatgacaacaacactcaatgtgttagagggagagtcataggct |
413 |
Q |
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| T |
41038094 |
gagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggcatgtatgacaacaacactcaatgtgttagagggagagtcataggct |
41037995 |
T |
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| Q |
414 |
atacttacttgattca |
429 |
Q |
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| T |
41037994 |
atacttacttgattca |
41037979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 52 - 425
Target Start/End: Complemental strand, 41044374 - 41044019
Alignment:
| Q |
52 |
gcatagttgtagaccaaacatttagcatctaagagaaattaattaactcaaacatggt-taagcatggtctttattttaaaacaaaatcacgtataggtc |
150 |
Q |
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| T |
41044374 |
gcataattgtagaccaaacatttagcatgtaggagaaattaactaat----acatggtataagcatggtctttattttaaaagaaa-tcgcgtacaggtc |
41044280 |
T |
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| Q |
151 |
acacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatga |
250 |
Q |
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| T |
41044279 |
acacaagctgcttactagcagggtctttactt--------------gtctgatgcactacttgtagttgttttcaattctgaaatgctaattgaccatga |
41044194 |
T |
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| Q |
251 |
atggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggta |
350 |
Q |
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| T |
41044193 |
atagatatcgtgtgctgttgcagttattgaagcaccagctagaccaagcctaatcgtgttggggagcacggttttcaaatcaattatttgagcaagggta |
41044094 |
T |
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| Q |
351 |
acaattttgccattggcatgtatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttga |
425 |
Q |
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| T |
41044093 |
gcaattttgcgattgtcataagtgacaagaacactcaatgtcttagagggaaagtcataggctacacttacttga |
41044019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 204 - 423
Target Start/End: Complemental strand, 41066388 - 41066169
Alignment:
| Q |
204 |
gcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaa |
303 |
Q |
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| T |
41066388 |
gcgctgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagaccaaacctaa |
41066289 |
T |
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| Q |
304 |
ccgtgttggggagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggcatgtatgacaacaacactcaatgtgttagagggaga |
403 |
Q |
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| T |
41066288 |
ccttgttggggagcacagctttcaaatcaacgatttgagcaatggtagaaaattttccattggcataagtgacaacaacactcaatgtgttagaggaaga |
41066189 |
T |
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| Q |
404 |
gtcataggctatacttactt |
423 |
Q |
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|||||| ||| ||||||||| |
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| T |
41066188 |
gtcatatgctttacttactt |
41066169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 41066522 - 41066449
Alignment:
| Q |
112 |
agcatggtctttattttaaaacaaaatcacgtataggtcacacaagctgcttactagc-agggtctttatttaga |
185 |
Q |
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| T |
41066522 |
agcagggtttttattttaaaagaaac-cacgtacaggtcacacaagctgcttactagcaaaggtctttatttaga |
41066449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 195 - 423
Target Start/End: Original strand, 8495738 - 8495966
Alignment:
| Q |
195 |
ttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagac |
294 |
Q |
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|||| |||||| ||||||| |||||||||||| ||||| ||| | | ||||||||||||||| || |||| | |||||||||||||||| ||||||||| |
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| T |
8495738 |
ttgtctgatgcactgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagac |
8495837 |
T |
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| Q |
295 |
caaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggcatgtatgacaacaacactcaatgtgtt |
394 |
Q |
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| T |
8495838 |
caaacctaaccttgttggggagcactgttttcaaatcaactatttgagcaatggtggaaaattttccattggcataagtgacaacaacactcaatgtgtt |
8495937 |
T |
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| Q |
395 |
agagggagagtcataggctatacttactt |
423 |
Q |
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| T |
8495938 |
tgaggaagagtcataagctatgcttactt |
8495966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 8488226 - 8488368
Alignment:
| Q |
195 |
ttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagac |
294 |
Q |
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|||| |||||| ||||||| |||||||||||| ||||| ||| | | ||||||||||||||| || |||| | |||||||||||||||| ||||||||| |
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| T |
8488226 |
ttgtctgatgcactgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagac |
8488325 |
T |
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| Q |
295 |
caaacctaaccgtgttggggagcacagttttcaaatcaactat |
337 |
Q |
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| T |
8488326 |
caaacctaaccttgttagggagcactgttttcaaatcaactat |
8488368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 21489406 - 21489359
Alignment:
| Q |
376 |
caacaacactcaatgtgttagagggagagtcataggctatacttactt |
423 |
Q |
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| T |
21489406 |
caacaacactcaatgtgttagagggagagtcatagattatacttactt |
21489359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 8488129 - 8488165
Alignment:
| Q |
147 |
ggtcacacaagctgcttactagcagggtctttattta |
183 |
Q |
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| T |
8488129 |
ggtcacacaagctgcttactagcagattctttattta |
8488165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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