View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_26 (Length: 424)
Name: NF11758_low_26
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 37894267 - 37893875
Alignment:
| Q |
18 |
caattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggttttt |
117 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894267 |
caattattacacatgctgataattcttctatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggttttt |
37894168 |
T |
|
| Q |
118 |
gtgtcctcctgnnnnnnntgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgc |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894167 |
gtgtcctcctgaaaaaaatgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgc |
37894068 |
T |
|
| Q |
218 |
ttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacnnnnnnncagcaacttttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37894067 |
ttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgactttttttcagcaacttttg |
37893968 |
T |
|
| Q |
318 |
atgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893967 |
atgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttct |
37893875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 37189366 - 37188975
Alignment:
| Q |
19 |
aattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
37189366 |
aattattacacatgcagataattcttgtatcaataccgtacttattgacatgataacacaattgagttgaaattaatcaa-ttacaactcttggtttttg |
37189268 |
T |
|
| Q |
119 |
tgtcctcctgnnnnnnn----tgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttc |
214 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189267 |
tgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttc |
37189168 |
T |
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| Q |
215 |
tgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacnnnnnnncagcaactt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37189167 |
tgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac-ttttttcgtatactt |
37189069 |
T |
|
| Q |
315 |
ttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttcttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189068 |
ttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttcttt |
37188975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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