View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_27 (Length: 414)
Name: NF11758_low_27
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 366
Target Start/End: Original strand, 35200196 - 35200555
Alignment:
| Q |
5 |
gagaagaaagaaagaaacaaatttatgaaattacataaacatccttnnnnnnntgtattttaaatactacttaaatgannnnnnnnnaggggaactactt |
104 |
Q |
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| T |
35200196 |
gagaagaaagaaagaaacatatttatgaaattaaataaacatccttaaaaaaatgtattttaaatactacttaaatgatttttttt-aggggaactactt |
35200294 |
T |
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| Q |
105 |
caatgatata--cacaagagaacactttcaaaacatatttttacaagtgttaaatgacaccttcagatatcatttaaccacactaatatctttattttat |
202 |
Q |
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| T |
35200295 |
caatgatatatacacaacagaacactttcaaaacatatttttacaagtgttaaatgacaccttcaaatatcatttaaccacactaatatcttaattttat |
35200394 |
T |
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| Q |
203 |
tttaaaaatatttacaaggatcataatactttggagataactgttcacatgtgtcgattaataacaaattcaatatgttacatcaccttaaaatttcaat |
302 |
Q |
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| T |
35200395 |
tttaaaaatatttacaaggatcataatactttggagataactgttcacatgtgtcgat---taacaaattcaatatgttacatcaccttaaaatttcatt |
35200491 |
T |
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| Q |
303 |
taatgaaattgtgaaattggttaatgacacaactcactatttgccacatcacattctttttaaa |
366 |
Q |
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| T |
35200492 |
taatgaaatcgtgaaattggttaatgacagaactaaatatttgccacgtcagatactttttaaa |
35200555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 35200743 - 35200781
Alignment:
| Q |
360 |
ttttaaaagtgacaaatgtgtaaataaggtgaatagtac |
398 |
Q |
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| T |
35200743 |
ttttaaaagtgacaaatgtgtaaataaggtgaatagtac |
35200781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 24737093 - 24737122
Alignment:
| Q |
307 |
gaaattgtgaaattggttaatgacacaact |
336 |
Q |
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| T |
24737093 |
gaaattgtgaaattggttaatgacacaact |
24737122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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