View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_28 (Length: 402)

Name: NF11758_low_28
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_28
NF11758_low_28
[»] chr1 (10 HSPs)
chr1 (1-223)||(15671058-15671271)
chr1 (249-324)||(33617660-33617735)
chr1 (250-324)||(33401425-33401499)
chr1 (249-306)||(28446535-28446592)
chr1 (234-282)||(5602944-5602993)
chr1 (234-306)||(28474792-28474865)
chr1 (234-306)||(50065478-50065551)
chr1 (251-319)||(35563378-35563446)
chr1 (234-306)||(28475987-28476060)
chr1 (370-402)||(15671254-15671286)
[»] chr8 (4 HSPs)
chr8 (235-317)||(33228877-33228960)
chr8 (234-324)||(5967224-5967315)
chr8 (234-282)||(3588340-3588389)
chr8 (232-279)||(33228166-33228214)
[»] chr5 (13 HSPs)
chr5 (258-329)||(1145166-1145237)
chr5 (234-314)||(17636344-17636425)
chr5 (249-324)||(6706022-6706097)
chr5 (232-306)||(34016000-34016075)
chr5 (234-322)||(11135741-11135830)
chr5 (270-322)||(6158132-6158184)
chr5 (234-312)||(17644599-17644678)
chr5 (234-314)||(6158940-6159020)
chr5 (234-310)||(7164750-7164827)
chr5 (231-282)||(759157-759209)
chr5 (263-322)||(38740635-38740694)
chr5 (234-299)||(34017631-34017697)
chr5 (234-306)||(28677886-28677959)
[»] chr7 (8 HSPs)
chr7 (234-290)||(33839463-33839520)
chr7 (237-324)||(5159-5247)
chr7 (233-324)||(19365382-19365474)
chr7 (235-321)||(10525810-10525897)
chr7 (249-324)||(38386190-38386265)
chr7 (234-320)||(19931488-19931575)
chr7 (232-280)||(10527015-10527064)
chr7 (263-307)||(26011957-26012001)
[»] chr3 (6 HSPs)
chr3 (234-324)||(15040681-15040772)
chr3 (234-324)||(54525802-54525893)
chr3 (234-327)||(53814545-53814639)
chr3 (249-324)||(7665749-7665824)
chr3 (234-312)||(54528955-54529034)
chr3 (234-311)||(50663875-50663953)
[»] chr2 (4 HSPs)
chr2 (232-306)||(8273243-8273318)
chr2 (234-282)||(25389879-25389928)
chr2 (232-282)||(22788014-22788065)
chr2 (287-317)||(28360079-28360109)
[»] chr4 (7 HSPs)
chr4 (237-324)||(24974133-24974221)
chr4 (250-322)||(27992132-27992204)
chr4 (251-324)||(55527900-55527973)
chr4 (234-306)||(33164510-33164583)
chr4 (233-324)||(12586785-12586876)
chr4 (237-324)||(36501852-36501940)
chr4 (230-281)||(54208176-54208228)
[»] chr6 (6 HSPs)
chr6 (249-324)||(32274200-32274275)
chr6 (234-324)||(17436528-17436619)
chr6 (234-316)||(806545-806628)
chr6 (234-307)||(31522539-31522613)
chr6 (234-306)||(14153354-14153427)
chr6 (232-283)||(24326942-24326994)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15671271 - 15671058
Alignment:
Q  1 ttaagaattaggggagttaagatccttcaaaaaatttagttttttctcggcaattgcttcttaaccgccttcctacnnnnnnnnnnnnnnnnnnngatca 100  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||                   |||||    
T  15671271 ttaagaattaggggagttaagatccttcaaaagttttggttttttctcggcaattgcttcttaactgccttcctacaaaaaaaaaa---------gatca 15671181  T
Q  101 tttgaagaggcatgtgattcaagatgttttgaagttgcgttgttaaatgagttggtgtggttatcgtactcccaatgaaagtttcaacattgcttgagat 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15671180 tttgaagaggcatgtgattcaagatgttttggagttgcgttgttaaatggattggtgtggttatcgtactcccaatgaaagtttcaacattgcttgagat 15671081  T
Q  201 tttttcttccttggcccgaaaag 223  Q
    ||| |||| ||||| ||||||||    
T  15671080 tttctctttcttggtccgaaaag 15671058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 33617660 - 33617735
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||||||||||||||||||| || || || ||| ||||||||||   |||||||||||||||    
T  33617660 ccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcgctagtgcaaatta 33617735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 33401425 - 33401499
Alignment:
Q  250 caaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||||||||||||||||||||||||||||||| || || ||  || ||||||||||   |||||||||||||||    
T  33401425 caaatggattcgctcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaatta 33401499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 28446592 - 28446535
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    |||||||||||||||||||| ||||||||||||| || || || ||||||||||||||    
T  28446592 ccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaac 28446535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 5602944 - 5602993
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgac 282  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgac 5602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 28474792 - 28474865
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||| ||||| |||||||||| ||||||| |||| |||||||| || || || ||||||||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaac 28474865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 50065478 - 50065551
Alignment:
Q  234 gaattctgctctttaccaaa-tggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||| ||| |||||||| |||| |||||||||| ||||||||||||| || || ||||| |||||||||||    
T  50065478 gaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaac 50065551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 35563378 - 35563446
Alignment:
Q  251 aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgca 319  Q
    |||||||||||||||||| ||||||||||||| || || || || |||||||||||   ||||||||||    
T  35563378 aaatggattcgctcattcccaaagtaaatgactgaaatgcccctgcgcatgttaacatgcgctagtgca 35563446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 28476060 - 28475987
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||||  || || || |||| |||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaac 28475987  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 15671286 - 15671254
Alignment:
Q  370 ggggtaagtttcttgttaagaattaggggagtt 402  Q
    |||||||| ||||||||||||||||||||||||    
T  15671286 ggggtaagcttcttgttaagaattaggggagtt 15671254  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 33228960 - 33228877
Alignment:
Q  235 aattctgctctttac-caaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtg 317  Q
    |||| |||||||||| |||||||||| |||||||  ||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  33228960 aattatgctctttactcaaatggatttgctcatttccaaagtaaatgacggatatacccctacacatgttaactcacgctagtg 33228877  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 5967315 - 5967224
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||  || || || ||||||||||||||   |||||||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 5967224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 3588340 - 3588389
Alignment:
Q  234 gaattctgctcttta-ccaaatggattcgctcattctcaaagtaaatgac 282  Q
    ||||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgac 3588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 33228166 - 33228214
Alignment:
Q  232 aggaattctgctcttta-ccaaatggattcgctcattctcaaagtaaat 279  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||||||||    
T  33228166 aggaattctgctctttatccaaatggattcaatcattcccaaagtaaat 33228214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 1145166 - 1145237
Alignment:
Q  258 ttcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaattaaaaaa 329  Q
    ||||||||||| |||||||||||||  | || |||||||||||||||||||||||||||| |||||||||||    
T  1145166 ttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcacgctagtgtaaattaaaaaa 1145237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 17636344 - 17636425
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgcta 314  Q
    ||||||||||| ||||| |||||||||||||||||| |||| |||||||  || ||||| |||| |||||||||||||||||    
T  17636344 gaattctgctcattacctaaatggattcgctcattcccaaaataaatgattgaaatacccctacacatgttaactcacgcta 17636425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 6706097 - 6706022
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||||  ||||||||||||| || || || ||||||||||||||   |||||||||||||||    
T  6706097 ccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 6706022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 34016000 - 34016075
Alignment:
Q  232 aggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| || || || |||| |||||||||    
T  34016000 aggaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaac 34016075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 11135741 - 11135830
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaat 322  Q
    ||||| ||||||||||| |||||  ||||||||||  |||| ||||||||  | ||||| ||||||||||||||| ||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgctagtgcaaat 11135830  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 6158132 - 6158184
Alignment:
Q  270 caaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaat 322  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||| ||||    
T  6158132 caaagtaaatgaccgaaatacccctacgcatgttaactcacgctagtgtaaat 6158184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 17644678 - 17644599
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgc 312  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||| |  | ||||| ||||||||||||| ||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacgc 17644599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 6159020 - 6158940
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgcta 314  Q
    ||||||||||| ||||  |||||||||||||||||| ||||||||||| |  | ||||| ||||| ||||||||||||||||    
T  6159020 gaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaatacc-ctacgtatgttaactcacgcta 6158940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 7164827 - 7164750
Alignment:
Q  234 gaattctgctctttac-caaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcac 310  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||||   | ||| | |||||||| |||||||||    
T  7164827 gaattctactctttactcaaatggattcgctcattctcaaaataaatgattaaaatatccctacgcatattaactcac 7164750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 759157 - 759209
Alignment:
Q  231 gaggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgac 282  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||||||||    
T  759157 gaggaattctgctcattacctaaatggattcgatcattcccaaagtaaatgac 759209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 38740694 - 38740635
Alignment:
Q  263 tcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaat 322  Q
    |||||| ||||||||||||| ||||||    | |||||||||||||||||||||||||||    
T  38740694 tcattcccaaagtaaatgacggatatattattgcgcatgttaactcacgctagtgcaaat 38740635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 34017697 - 34017631
Alignment:
Q  234 gaattctgctctttac-caaatggattcgctcattctcaaagtaaatgacagatatacctctacgca 299  Q
    ||||||||||| |||| ||||||| | |||||||| |||||||||||||| || ||||| |||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgca 34017631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 28677886 - 28677959
Alignment:
Q  234 gaattctgctcttta-ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||| ||| ||||||||| ||||||||||  |||||||||||| || ||||| ||||| | ||||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaac 28677959  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 33839520 - 33839463
Alignment:
Q  234 gaattctgctcttta-ccaaatggattcgctcattctcaaagtaaatgacagatatac 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  33839520 gaattctgctctttatccaaatggattcgctcattctcaaagtaaatgacggatatac 33839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 5247 - 5159
Alignment:
Q  237 ttctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||| || || || ||||||||||||||   |||||||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 5159  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 19365474 - 19365382
Alignment:
Q  233 ggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||| ||||| |||||||||||||||||| ||||  ||||||| || ||||| |||||||| |||||   |||||||||||||||    
T  19365474 ggaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcgctagtgcaaatta 19365382  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 10525810 - 10525897
Alignment:
Q  235 aattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaa 321  Q
    |||| ||||||||| | |||| |||| |||||||||  ||||||||||  |||||||| |||| |||||||||||||||| |||||||    
T  10525810 aattatgctctttagctaaatagatttgctcattcttgaagtaaatgatggatatacccctacacatgttaactcacgctcgtgcaaa 10525897  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 38386190 - 38386265
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||||  ||||||||||||  || || || ||||||||||||||   |||||||||||||||    
T  38386190 ccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 38386265  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 19931488 - 19931575
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaa 320  Q
    ||||||||||||||| | |||||| || |||| |||||||||||||||||  | ||||   ||||||| ||||||||||||| |||||    
T  19931488 gaattctgctctttatctaaatggttttgctcgttctcaaagtaaatgactaaaatacacatacgcatattaactcacgctaatgcaa 19931575  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 10527064 - 10527015
Alignment:
Q  232 aggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatg 280  Q
    ||||||||||||||||||| ||||||||||  |||||| |||||||||||    
T  10527064 aggaattctgctctttacccaaatggattcaatcattcccaaagtaaatg 10527015  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 26012001 - 26011957
Alignment:
Q  263 tcattctcaaagtaaatgacagatatacctctacgcatgttaact 307  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||    
T  26012001 tcattctcaaagtaaatgaccaaaatacctctatgcatgttaact 26011957  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 15040681 - 15040772
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||| || || || ||||||||||||||   | |||||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcactagtgcaaatta 15040772  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 54525802 - 54525893
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||| ||||||||||| |||| ||||||||||||  ||||||||||||| || ||| | ||| | || |||||||||||||||||||||||    
T  54525802 gaattatgctctttacctaaattgattcgctcatttccaaagtaaatgactgaaatatccctatgtatattaactcacgctagtgcaaatta 54525893  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 53814639 - 53814545
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaattaaaa 327  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||   | || || |||||||||||||    ||||||||||||||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcgctagtgcaaattaaaa 53814545  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 7665749 - 7665824
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||||| ||||||||||||| || || ||  || ||||||||||   |||||||||||||||    
T  7665749 ccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaatta 7665824  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 54529034 - 54528955
Alignment:
Q  234 gaattctgctctttaccaaatggattc-gctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgc 312  Q
    ||||||||||||||||||||  ||||  |||||||||||| ||||||| |  | ||||| |||| |||||||||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaactcacgc 54528955  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 50663875 - 50663953
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacg 311  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||||||| ||  | || || |||||||||||||||||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacg 50663953  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 8273243 - 8273318
Alignment:
Q  232 aggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| || || || ||||||||||||||    
T  8273243 aggaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 8273318  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 25389928 - 25389879
Alignment:
Q  234 gaattctgctctttac-caaatggattcgctcattctcaaagtaaatgac 282  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  25389928 gaattctgctctttactcaaatggatttgctcattctcaaagtaaatgac 25389879  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 22788065 - 22788014
Alignment:
Q  232 aggaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgac 282  Q
    ||||||||||||||||||| ||||||||| | |||||| |||||||||||||    
T  22788065 aggaattctgctctttacccaaatggatttgttcattcccaaagtaaatgac 22788014  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 28360079 - 28360109
Alignment:
Q  287 atacctctacgcatgttaactcacgctagtg 317  Q
    |||||||||||||||||||||||||||||||    
T  28360079 atacctctacgcatgttaactcacgctagtg 28360109  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 24974221 - 24974133
Alignment:
Q  237 ttctgctcttta-ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||| ||| ||||||||||| |||||||| ||||||||||||| || || || ||||||||||||||   |||||||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 24974133  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 27992132 - 27992204
Alignment:
Q  250 caaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaat 322  Q
    |||||||||| |||||||| ||||||||||||| || || || ||| ||||||||||||||||||||| ||||    
T  27992132 caaatggatttgctcattcccaaagtaaatgaccgaaatgcccctaagcatgttaactcacgctagtgtaaat 27992204  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 55527973 - 55527900
Alignment:
Q  251 aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||  ||||| ||||||| || || || |||||||||||||| | |||||||||||||||    
T  55527973 aaatggattcgctcatttccaaagcaaatgaccgaaatgcccctacgcatgttaacacgcgctagtgcaaatta 55527900  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 33164583 - 33164510
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||| |  | || || ||||||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaac 33164510  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 12586876 - 12586785
Alignment:
Q  233 ggaattctgctctttac-caaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||||| |||| |||| ||||||||||||||||||  |||| |||||||| || ||  | ||||||||||||||   |||||||||||||||    
T  12586876 ggaattcagctcattactcaaatggattcgctcatttccaaa-taaatgaccgaaatgtccctacgcatgttaacatgcgctagtgcaaatta 12586785  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 36501940 - 36501852
Alignment:
Q  237 ttctgctctttaccaa-atggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||| ||||| | |||||||||||||||| ||||||||||||  || || || ||||||||||| ||   |||| ||||||||||    
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcgctggtgcaaatta 36501852  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 54208176 - 54208228
Alignment:
Q  230 ggaggaattctgctcttta-ccaaatggattcgctcattctcaaagtaaatga 281  Q
    ||||||||| ||||||||| |||||||| || |||||||| ||||||||||||    
T  54208176 ggaggaattatgctctttatccaaatggttttgctcattcccaaagtaaatga 54208228  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 32274200 - 32274275
Alignment:
Q  249 ccaaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    |||||||||||||||||||| ||||||||||||  || || || ||||||||||||||   |||||||||||||||    
T  32274200 ccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaatta 32274275  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 17436619 - 17436528
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagtgcaaatta 324  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||||||||||| || ||  | |||| |||||||||   |||||||||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcgctagtgcaaatta 17436528  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 806545 - 806628
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaactcacgctagt 316  Q
    ||||||||||||||||| |||  | || |||||||||||||||||||| |  | ||||  ||||| ||||||||||||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaactcacgctagt 806628  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 31522613 - 31522539
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaact 307  Q
    ||||||||||| ||||| |||||| | ||||||||| ||||||||||||| || || || ||||||| |||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaact 31522539  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 14153354 - 14153427
Alignment:
Q  234 gaattctgctctttacc-aaatggattcgctcattctcaaagtaaatgacagatatacctctacgcatgttaac 306  Q
    ||||||||||| ||||| |||||  || |||||||| |||||||||||||  | ||||| ||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 24326942 - 24326994
Alignment:
Q  232 aggaattctgctctttac-caaatggattcgctcattctcaaagtaaatgaca 283  Q
    ||||||||||||| |||| |||||| |||||||||||| |||| |||||||||    
T  24326942 aggaattctgctcattactcaaatgaattcgctcattcccaaaataaatgaca 24326994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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