View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_29 (Length: 392)
Name: NF11758_low_29
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 29242738 - 29243107
Alignment:
| Q |
11 |
acatcatgcatttcctcttctt-caaagtcattcttagtgcactttttgagagtaaacttgtctccctcagccacaagagtattagctagttaatttact |
109 |
Q |
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| T |
29242738 |
acatcatgcatttcctcttctttcaaagtcattcttagtgcactttttgagagtaaacttgtctccctcagccacaagagtattagctagttaatttact |
29242837 |
T |
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| Q |
110 |
gctttccatttcatatctcttgagaacattttcaatatagcatttgtgacaatctaagaataccccaagaacaatctcagtgtatctgtatgcctaatac |
209 |
Q |
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| T |
29242838 |
gctttccatttcatatctcttgagaacattttcaatatagcatttgtgacaatctaagaataccccaagaacaatctcagtgtatctgtatgcctaatac |
29242937 |
T |
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| Q |
210 |
caaagatgtatgaccaaaatttttcatttcaaaattcttacctagaaatctcttggctcatgcaataaatatgtat-attattggcaagcaaaacttcat |
308 |
Q |
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| T |
29242938 |
caaagatgtatgaccaaaaaatttcatttaaaaattcttacctagaaatctcttggctcatgcaataaatatgtatcattattggcaagcaaaacttcat |
29243037 |
T |
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| Q |
309 |
tcacatataaaaccataatatatacttgctctcgtagattgtatgatatatataaatcattaaccaaatt |
378 |
Q |
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| T |
29243038 |
tcacatataaaaccataatatatacttgctctcgtagattgtatgatatatataaatcattaaccaaatt |
29243107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 378
Target Start/End: Original strand, 29268330 - 29268558
Alignment:
| Q |
153 |
ttgtgacaatctaagaataccccaagaacaatctcagtgtatctgtatgcctaataccaaagatgtatgaccaaaatttttcatttcaaaattcttacct |
252 |
Q |
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| T |
29268330 |
ttgtgaaaatctaagaatacgtcgagaacgatcttggtctatctgtatgccccatatcaaagatgcataaccaaaaactttcatttcaaaattcttagct |
29268429 |
T |
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| Q |
253 |
agaaatctcttggc-tcatgcaataaatatgtat-attattggcaagcaaaacttcattcacatataaaacc--ataatatatacttgctctcgtagatt |
348 |
Q |
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| T |
29268430 |
agaagtctcttggcttcatgcaattagtccatatcattattggcaagcaaaacttcatccacaaataaaaccagaaaaaatatacttgctcccatagaac |
29268529 |
T |
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| Q |
349 |
gtatgatatatataaatcattaaccaaatt |
378 |
Q |
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| T |
29268530 |
gtatgatatata-caatcatcaaccaaatt |
29268558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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