View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_3 (Length: 885)
Name: NF11758_low_3
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 19 - 875
Target Start/End: Original strand, 34625917 - 34626775
Alignment:
| Q |
19 |
atattatcatatcagtgaagttcattggcttctaatatcttaatgtccttaatctgttgccaatttgccactaatgactaggagcctcatcctagttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625917 |
atattatcatatcagtgaagttcattggcttctaatatcttaatgtccttaatctgttgccaatttgccactaatgactaggagcctcatcctagttgaa |
34626016 |
T |
|
| Q |
119 |
aaatctcaaatactatatgttgcagaaaatgaatggctgtttgatggtggatgttaaggatgaatgttgcgtgaatggtggcgtttggctgaaatctatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
34626017 |
aaatctcaaatactatatgttgcagaaaatgaatggctgtttgatggtggatgttaaggatgaatgttgcatgaatggtggcgtttggctgaaatctacg |
34626116 |
T |
|
| Q |
219 |
tgagattctgcttgatggtggggtgtacctaaagacactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttg |
318 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626117 |
tgagattatgcttgatggtggggtgtacctaaaaacactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatacttta |
34626216 |
T |
|
| Q |
319 |
ataggtgatgacgtaagacttgtataatttgaaagagttcgtattagacttatttttatggtattaaatataattagtgataaaccacagtt--tctctc |
416 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
34626217 |
ataggtgatgacgtaagactcgtataatttgaaagagttcgtattagacttatttttatggtattaaaaataattagtgataaaccacagtttctctctc |
34626316 |
T |
|
| Q |
417 |
tgatcagctgtcactaattgtctcaatctagaggaagcacaaataaccaaattggcatgttgtttgttagatagaccctatattatttccatttgaccaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34626317 |
tgatcagctgtcactaattgtctcaatctagaggaagcacaaataaccaaattggcatgttgtttgttagatagaccctatagtatttccatttgaccaa |
34626416 |
T |
|
| Q |
517 |
agataaacacattatgattaaaccaaaaaatacatgtttgtcagaagtttgttatcaggtaggtgaacttcaagccttatttcaacacattacaagcatc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626417 |
agataaacacattatgattaaaccaaaaaatacatgtttgtcagaagtttgttatcaggtaggtgaacttcaagccttatttcaacacattacaagcatc |
34626516 |
T |
|
| Q |
617 |
tcatttggaattttatgaattcnnnnnnnggtatatttgtctctttaagcattagaaaccaatgaatataatactcctatatatcaccatcattttcctc |
716 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34626517 |
tcatttggaattttatgaattctttttttggtatatttgtctctttaagcattagaaaccaataaatataatactcctatatatcaccatcattttcctc |
34626616 |
T |
|
| Q |
717 |
ttctataagtctcacgggatttgattccctctaattattaaataaatttccctacctcaccttcacttttgatcttccacacacattactctttctttcc |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34626617 |
ttctataagtctcacgggatttgattccctctaattattaaataaatttccctacctcaccttcacttttgatcttccacacacattactctttctttcc |
34626716 |
T |
|
| Q |
817 |
tttctcctaaactcatgtctgtgacttcatcttctttatttgttttcacttttcctttg |
875 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34626717 |
tttctcctaaactcatgtctgtgacttcatcttctttatttgttttcactttttctttg |
34626775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 14493570 - 14493493
Alignment:
| Q |
267 |
aagtcagtata-tgattgaggtgggtgagaggtttagaatgagacatactttgataggtgatgacgtaagacttgtat |
343 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||| | |||||| || |||||||||| |
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| T |
14493570 |
aagtcagtataatgattgaggtgggtgagaggtttaaaatgagacctaccttgattgatgatgatgtgagacttgtat |
14493493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 36128292 - 36128356
Alignment:
| Q |
259 |
tgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgatagg |
323 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| ||||| |||||||||||||||||| |||||||| |
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| T |
36128292 |
tgacgtttaagtcagtatgtgtttgaggtggatgagacgtttagaatgagacataccttgatagg |
36128356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 24850735 - 24850687
Alignment:
| Q |
265 |
ctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacata |
313 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
24850735 |
ctaaggcaatatatgattgaggtgggtgagaggtttagaatgagacata |
24850687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 28397208 - 28397146
Alignment:
| Q |
267 |
aagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgataggtgatga |
329 |
Q |
| |
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|||||| ||||||||||||||| |||| || |||| ||||||| ||| |||||||||| |||| |
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| T |
28397208 |
aagtcaatatatgattgaggtgtgtgaaagatttataatgagagataatttgataggtaatga |
28397146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 36159458 - 36159531
Alignment:
| Q |
254 |
cactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgataggtgat |
327 |
Q |
| |
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|||||||||| | || ||||||||||||| |||| |||||| ||||| || ||| ||||| |||||||||||| |
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| T |
36159458 |
cactctgacgcccaaatcagtatatgattaaggtaagtgagaagtttaaaacgagtcataccttgataggtgat |
36159531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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