View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_33 (Length: 334)
Name: NF11758_low_33
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 51858414 - 51858118
Alignment:
| Q |
18 |
aacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaactc |
117 |
Q |
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| T |
51858414 |
aacactactttataaacaccattaaggggctcaaatgcaattaaaccacgcccatatctagaaaaactgagagtatgtgcttgaaacatttccttaactc |
51858315 |
T |
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| Q |
118 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858314 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
51858215 |
T |
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| Q |
218 |
caacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag |
314 |
Q |
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| T |
51858214 |
caacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag |
51858118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 34865075 - 34865268
Alignment:
| Q |
18 |
aacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaactc |
117 |
Q |
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|||||||||||||||||| || |||||||||||||| ||||||| ||| |||| |||||||||| ||| |||| ||||||||||| |||| |||||| |
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| T |
34865075 |
aacactactttataaacatcagaaaggggctcaaatgcaattaaatcacctccatctctagaaaaattgatagtatatgcttgaaacaattccataactc |
34865174 |
T |
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| Q |
118 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga |
211 |
Q |
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| T |
34865175 |
gtaagttcatgaaatctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga |
34865268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 34865308 - 34865396
Alignment:
| Q |
212 |
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggag |
300 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||| |||||||||||| || || |||| ||||| ||||| |||||| |
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| T |
34865308 |
agttggaaataatggttgtaggcgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggag |
34865396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 34145460 - 34145347
Alignment:
| Q |
95 |
tgcttgaaacatttccttaactcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgat-tgttagtcaaaatatctaagtgacg |
193 |
Q |
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||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||||||| ||| ||| |||||||||| | |||||||||||| |
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| T |
34145460 |
tgcttgaaacaattctcttactcgcaagttcatgaaatctaacacgttgaatgggtatgtgtgtgttatg-gatgtgttagtcaagacatctaagtgacg |
34145362 |
T |
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| Q |
194 |
aagtttgctagattt |
208 |
Q |
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|| ||| | |||||| |
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| T |
34145361 |
aaattttccagattt |
34145347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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