View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_35 (Length: 323)
Name: NF11758_low_35
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 23889787 - 23889593
Alignment:
| Q |
112 |
atgaccttccaatatgttnnnnnnntataaagcttatcattcgctttgatttttgcaacaaaacttgcacacatttcaatttgctttttatcatccactt |
211 |
Q |
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| T |
23889787 |
atgaccttccaatatgttaaaaaaatataaagcttatcattcgctttgttttttgcaacaaaacttgcacacatttcattttgctttttatcatccactt |
23889688 |
T |
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| Q |
212 |
cttgagaaattttaaaataaaaatttaaatctttacaacaatgatatctgcacctgtggcaatagcaccatgtacaagaaaaagaatacatagat |
306 |
Q |
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| T |
23889687 |
cttgagaaattttaaaataaaaatttaaatctttacaacaatgatatctgcacctgtggcaatagcaccatgtacaagaaaaagaatacatagat |
23889593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 23893377 - 23893280
Alignment:
| Q |
15 |
atgaacttatgtcaccaattttagagaccgactggtcctacaaattctaataaatgaaaggaggtacttcaaatattttgcaacaagacttatagaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
23893377 |
atgaacttatgtcaccaattttagagaccgactggtcctacaaattctaataaatgaaagaaagtacttcaaatattttgcaacaagacttatagaaa |
23893280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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