View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11758_low_43 (Length: 246)
Name: NF11758_low_43
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 24142768 - 24142895
Alignment:
| Q |
110 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142768 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcatttaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
24142867 |
T |
|
| Q |
210 |
gacctgcggctgctcatcaacatcatct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24142868 |
gacctgcggctgctcatcaacatcatct |
24142895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 24142670 - 24142735
Alignment:
| Q |
14 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
79 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24142670 |
ttaatatcatgatacgattcacgttagtttacacaaataaaaataaacatagccttcagcttacat |
24142735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 16362953 - 16362888
Alignment:
| Q |
14 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
79 |
Q |
| |
|
|||||||||||||| |||||| || |||||||| |||||||||||| |||||| ||||| |||||| |
|
|
| T |
16362953 |
ttaatatcatgatatgattcaattcagtttacataaataaaaataatcatagcattcagtttacat |
16362888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 9030758 - 9030704
Alignment:
| Q |
25 |
atacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
79 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
9030758 |
atacgattcaatccagtttacaaaaataaaaataaacatagccttcagcttacat |
9030704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 1771830 - 1771775
Alignment:
| Q |
14 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagcctt |
69 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | |||||| ||||||||||||| |
|
|
| T |
1771830 |
ttaatatcatgacacgattcagtttagtttacttatataaaattaaacatagcctt |
1771775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 9030564 - 9030477
Alignment:
| Q |
122 |
ccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||| || |||| |||| ||| |||| ||||||||||||||||| |
|
|
| T |
9030564 |
ccacatgaagatggtattgggtgagcacagacaagtcacgtgcgccatcaagatattcatttagcggttgtggctccacctccacctc |
9030477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 9030680 - 9030630
Alignment:
| Q |
29 |
gattcactttagtttacacaaataaaaataaacatagccttcagattacat |
79 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
9030680 |
gattcaattcagtttacataaataaaaataaacataaccttcagtttacat |
9030630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 42229494 - 42229445
Alignment:
| Q |
15 |
taatatcatgatacgattcactttagtttacacaaataaaaataaacata |
64 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
42229494 |
taatagcatgatacgattcagttaagtttacataaataaaaataaacata |
42229445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 5979524 - 5979492
Alignment:
| Q |
39 |
agtttacacaaataaaaataaacatagccttca |
71 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
5979524 |
agtttacataaataaaaataaacatagccttca |
5979492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University