View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_54 (Length: 204)
Name: NF11758_low_54
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_54 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 2356025 - 2356214
Alignment:
| Q |
15 |
atgaaggccactgataaaccgccacaattgaaaataaagtccttcaagaaaaatcctcaaaatttcagcgatgaaccagaatatttaaaacgaacaggga |
114 |
Q |
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| T |
2356025 |
atgaaggccactgataaaccgccacaattgaaaataaagtccttcaagaaaaatcctcaaaatttcagcgatgaaccagaatatttaaaatgaacaggga |
2356124 |
T |
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| Q |
115 |
agggaaacaggctaaaacaggaaatgacataccggagcgattggaacgaacttaagacgaaaggagttagcagagaggaaagtggagata |
204 |
Q |
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| T |
2356125 |
agggaaacaggctaaaacaggaaatgacataccggagcgattggaacgaacttaagacgaaaggagttagcagagaggaaagtggagata |
2356214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 23747614 - 23747554
Alignment:
| Q |
144 |
taccggagcgattggaacgaacttaagacgaaaggagttagcagagaggaaagtggagata |
204 |
Q |
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| T |
23747614 |
taccggagcaattggaacgaaattaagtcgaaaggaattagcagagaggaaagtggagata |
23747554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 23747733 - 23747696
Alignment:
| Q |
15 |
atgaaggccactgataaaccgccacaattgaaaataaa |
52 |
Q |
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| T |
23747733 |
atgaaggccacagataaaccgccacaattgaaaataaa |
23747696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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