View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_6 (Length: 764)
Name: NF11758_low_6
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Original strand, 34397073 - 34397809
Alignment:
| Q |
18 |
gttgcaaagaaacttctgcttgagtgtgaagaaacagcaacaggaacaaactctctcattcgtggtggatatggtggatggcttttgtacactgctgctt |
117 |
Q |
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| T |
34397073 |
gttgcaaagaaacttctgcttgagtgtgaagaaacagaaacaggaacaaactctctcattcgtggtggatatggtggatggcttttgtacactgctgctt |
34397172 |
T |
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| Q |
118 |
ctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397173 |
ctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgc |
34397272 |
T |
|
| Q |
218 |
agctaggagtaagaattctgaggtattcaacatgattcttgattttgctctcttaggaaaagattgtggtattgttgaattggatgaaggtgttggtggt |
317 |
Q |
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| T |
34397273 |
agctaggagtaagaattctgaggtattcaacatgattcttgattttgctctcttaggaaaagattgtggtattgttgaattggatgaaggtgttggtggt |
34397372 |
T |
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| Q |
318 |
ggagttttcaagagggagatattgaatagggccattcatgctgctgctagaggagggaattgggaaatacttaagaagcagcttcttttagtaagtgctt |
417 |
Q |
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| T |
34397373 |
ggagttttcaagagggagatattgaatagggccattcatgctgctgctagaggagggaattgggaaatactaaagaagcagcttcttttagtaagtgctt |
34397472 |
T |
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| Q |
418 |
ctcagattttatcttatagagatgttcaaggatgtactgtcttgcattcagcagctggaagaggccaggtagaggtaagtactcacatggtttaattaac |
517 |
Q |
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| T |
34397473 |
ctcagattttatcttatagagatgttcaaggatgtactgtcttgcattcagcagctggaagaggccaggtagaggtaagtactcacatggtttaattaac |
34397572 |
T |
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| Q |
518 |
actatgcttgtacgattaaaaattaacacg-aaaaaatgtaatttacttgtaattgaaatatttatgacacatgcgaaagacctgcttgctatgaagtac |
616 |
Q |
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| T |
34397573 |
actatgcttgtacgattaaaaattaacacgaaaaaaatgtaatttacttgtaattgaaatatttatgacacatgcgaaagacctgcttgctatgaagtac |
34397672 |
T |
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| Q |
617 |
tgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgtctcgttgtcgactatgtcacattcta |
716 |
Q |
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| T |
34397673 |
tgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgtttcgttgtcgactatgtcacattcta |
34397772 |
T |
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| Q |
717 |
aacactggatacgtctttaatctgagttatctgtgct |
753 |
Q |
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| T |
34397773 |
aacactggatacgtctttaatctgagttatctgtgct |
34397809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 38831669 - 38831511
Alignment:
| Q |
83 |
tggatatggtggatggcttttgtacactgctgcttctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaa |
182 |
Q |
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||||||||||||||||||| | |||||||||||||| ||||||||| |||| ||||||| |||||||||||| ||||| |||| | |||||||| ||| |
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| T |
38831669 |
tggatatggtggatggcttctttacactgctgcttcagctggtgatatggaatttgtttgtgaattgttgaggagagaatcttctcttgtttttggagaa |
38831570 |
T |
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| Q |
183 |
ggagagtatggtgttactgatatgttttatgctgcagctaggagtaagaattctgaggt |
241 |
Q |
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| T |
38831569 |
ggtgagtatggtgttactgatattttgtatgctgcagctagaagtaaaagttctgaggt |
38831511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 7997140 - 7997069
Alignment:
| Q |
163 |
ctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgcagctaggagtaagaatt |
234 |
Q |
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| T |
7997140 |
ctttgttggttttcggtgaaggagaatatggtgttactgatatactttatgctgctgctagaagcaagaatt |
7997069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 8021662 - 8021733
Alignment:
| Q |
163 |
ctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgcagctaggagtaagaatt |
234 |
Q |
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| T |
8021662 |
ctttgttggttttcggtgaaggagaatatggtgttactgatatactttatgctgctgctagaagcaagaatt |
8021733 |
T |
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