View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_8 (Length: 713)

Name: NF11758_low_8
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_8
NF11758_low_8
[»] chr8 (5 HSPs)
chr8 (1-339)||(4620196-4620534)
chr8 (395-658)||(4620617-4620886)
chr8 (1-133)||(1846898-1847030)
chr8 (35-167)||(4787123-4787255)
chr8 (39-173)||(4298017-4298151)
[»] chr1 (13 HSPs)
chr1 (1-160)||(40034320-40034479)
chr1 (1-151)||(7890673-7890823)
chr1 (9-160)||(51292129-51292280)
chr1 (21-143)||(38137497-38137619)
chr1 (21-140)||(7888419-7888538)
chr1 (2-173)||(43045954-43046125)
chr1 (1-160)||(45983332-45983491)
chr1 (1-135)||(3301236-3301370)
chr1 (1-173)||(45993099-45993271)
chr1 (2-144)||(43084382-43084524)
chr1 (2-135)||(43066320-43066453)
chr1 (2-60)||(43045501-43045559)
chr1 (194-239)||(45983246-45983291)
[»] chr2 (5 HSPs)
chr2 (1-144)||(34691331-34691474)
chr2 (1-144)||(34713743-34713886)
chr2 (1-144)||(16232680-16232823)
chr2 (1-151)||(33861345-33861495)
chr2 (194-239)||(33861558-33861603)
[»] chr4 (2 HSPs)
chr4 (1-135)||(4231973-4232107)
chr4 (76-149)||(19964623-19964696)
[»] chr5 (1 HSPs)
chr5 (74-165)||(16352207-16352298)
[»] chr6 (2 HSPs)
chr6 (2-135)||(7528735-7528868)
chr6 (21-135)||(7519364-7519478)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4620196 - 4620534
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4620196 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacatcctttttaatacctccaagcttgtagatcaaatgacca 4620295  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcaccttaatcttggaattctgcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620296 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcaccttaatcttggaattctgcca 4620395  T
Q  201 attcaacacagaaaacaacaggacattagtaaaataaattactttcagtatgctagctaccaacaaaacaaaagaataacattctgacaagtcnnnnnnn 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||           
T  4620396 attcaacacagaaaacaacaggacataagtaaaataaattactttcagtatgctagctaccaacaaaacaaaagaataacattttgacaagtcaaaaaaa 4620495  T
Q  301 gcaaaaccaatgataacctatgatacataggtacagggt 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4620496 gcaaaaccaatgataacctatgatacataggtacagggt 4620534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 395 - 658
Target Start/End: Original strand, 4620617 - 4620886
Alignment:
Q  395 tgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaatgacaacggttataaataagacaagtat--- 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||        
T  4620617 tgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaataacaacggttataaataagacacataagcc 4620716  T
Q  492 ---tattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgggacgata 588  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620717 aagtattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgggacgata 4620816  T
Q  589 cgaaattgaagaaaaagaaagcttgccctggaaggaagagaaatattgtagagaggagcagattggttcc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4620817 cgaaattgaagaaaaagaaagcttgccctggaaggaagagaaagattgtagagaggagcagattggttcc 4620886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1846898 - 1847030
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | ||||||||||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  1846898 agcatacttgaatgaacgcctgtttatctcagcagcttctttctcaaatctctcgatgacatccttttcaatacctccaagcttgtagatcaaatgacca 1846997  T
Q  101 gcagtggttgacttcccagagtcgacatgacca 133  Q
    || || ||||||||||| |||||||||||||||    
T  1846998 gccgtcgttgacttcccggagtcgacatgacca 1847030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 4787255 - 4787123
Alignment:
Q  35 gcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaa 134  Q
    ||||||||||||| || ||||||||| ||||||  ||| |||||||||||||||| ||||||| |||  |||||||||||||| |||| | | |||||||    
T  4787255 gcttctttctcaagtctctcaatgacatcctttccaatgcctccaagcttgtagagcaaatgagcagtggtggttgacttcccggagttggcttgaccaa 4787156  T
Q  135 taaacacaatattaataccaacctttcctttat 167  Q
    ||| |||||| ||||||| ||||||| ||||||    
T  4787155 taaccacaatgttaatacgaaccttttctttat 4787123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 4298017 - 4298151
Alignment:
Q  39 ctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaa 138  Q
    ||||||||| || ||||||||| ||||||| ||| ||||| || ||||||| ||||||| ||| ||||||||||||||| |||| | |||| |||||||     
T  4298017 ctttctcaagtctctcaatgacatccttttcaatgcctccgagtttgtagagcaaatgagcagtagtggttgacttcccggagttggcatggccaataac 4298116  T
Q  139 cacaatattaataccaacctttcctttatccatta 173  Q
    |||||| ||||||| | |||||   ||||||||||    
T  4298117 cacaatgttaatacgagcctttttcttatccatta 4298151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 40034479 - 40034320
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||| | | |||| |||||||| |||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  40034479 agcatacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaatgacatcctttttaataccgccaagcttgtagatcaaatgacca 40034380  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 160  Q
     ||||||||||||||||||||||||||| ||||||||| || || ||||||  |||||||    
T  40034379 ccagtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttt 40034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 7890823 - 7890673
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||  | |||| |||||||| ||||||||||||||||  || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  7890823 agcatacttgaatgaatgcctgttcatctcagcagcttctttctcaaatctatcgatgacatccttttcaatacctccaagcttgtagatcaaatgacca 7890724  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 151  Q
    || || ||||||||||| |||||||||||||||||||||| ||| ||||||    
T  7890723 gccgtcgttgacttcccggagtcgacatgaccaataaacagaatgttaata 7890673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 51292129 - 51292280
Alignment:
Q  9 tgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggt 108  Q
    ||||||||| |||||| |||||||  ||||||||||||| || ||||||| | | ||| | ||||||||||||||||||||||||||||||||||||  |    
T  51292129 tgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaatgtcattcttgtcaatacctccaagcttgtagatcaaatgaccagcagtatt 51292228  T
Q  109 tgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 160  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  51292229 tgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttt 51292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 38137619 - 38137497
Alignment:
Q  21 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 120  Q
    ||||||||||||  ||||||||||||| || ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38137619 tgtttatctcagtagcttctttctcaagtctctcaatgacatccttttcaatacctccaagtttgtagatcaaatgaccagcagtagttgacttcccaga 38137520  T
Q  121 gtcgacatgaccaataaacacaa 143  Q
    ||| ||||||||||||| |||||    
T  38137519 gtcaacatgaccaataaccacaa 38137497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 7888538 - 7888419
Alignment:
Q  21 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 120  Q
    ||||||||||||| ||||||||||||| |  ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7888538 tgtttatctcagcagcttctttctcaagtttctcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccgga 7888439  T
Q  121 gtcgacatgaccaataaaca 140  Q
     || ||||||||||||||||    
T  7888438 atcaacatgaccaataaaca 7888419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 43045954 - 43046125
Alignment:
Q  2 gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccag 101  Q
    ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | |||||||||||||||||||||||| |||||||    
T  43045954 gcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagcttgtagatcaagtgaccag 43046053  T
Q  102 cagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 173  Q
      |||||||| ||||||||||||||||| ||||| | |||||| || ||   ||||||| ||||| ||||||    
T  43046054 tggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttttctttacccatta 43046125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 45983491 - 45983332
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | |||| |||| ||| |||||||||||||  | |||||||||   ||| | ||||| |||||| |||| |||||||||||||    
T  45983491 agcatacttgaatgaacgcttgttcatcttagcagcttctttctcaagactctcaatgacactcttgtgaatacatccaagtttgtggatcaaatgacca 45983392  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 160  Q
    | ||||||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||||    
T  45983391 gtagtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaaccttt 45983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 3301236 - 3301370
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||||||||||||| |||||     
T  3301236 agcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgaccg 3301335  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaat 135  Q
    |  |||||||||||||| |||||||||||||||||    
T  3301336 gtggtggttgacttcccggagtcgacatgaccaat 3301370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 45993271 - 45993099
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | || | |||||||| |||||||||||||  | ||| |||||   ||| | ||||| |||||| |||| ||| |||||||||    
T  45993271 agcatacttgaatgaacgcttgatcatctcagcagcttctttctcaagactctcgatgacactcttgtgaatacatccaagtttgtggatgaaatgacca 45993172  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 173  Q
    | ||||||||||||||| ||||||||||||||||||| ||||||  |||||  ||||||| | ||||||||||    
T  45993171 gtagtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaaccttttccttatccatta 45993099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 43084382 - 43084524
Alignment:
Q  2 gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccag 101  Q
    ||||| |||||||||| | |||| |||||||| |||||||||||||| | ||| |||||   ||| | |||||||||||||||||||||||| |||||||    
T  43084382 gcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctctatgacacgcttgtcaatacctccaagcttgtagatcaagtgaccag 43084481  T
Q  102 cagtggttgacttcccagagtcgacatgaccaataaacacaat 144  Q
      |||||||| ||||||||||| ||||| ||||| | ||||||    
T  43084482 ttgtggttgatttcccagagtcaacatggccaatgaccacaat 43084524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 43066453 - 43066320
Alignment:
Q  2 gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccag 101  Q
    ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | |||||||||||| |||||||| || |||||||    
T  43066453 gcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagtttgtagattaagtgaccag 43066354  T
Q  102 cagtggttgacttcccagagtcgacatgaccaat 135  Q
      ||||||||||| |||||||||||||| |||||    
T  43066353 tggtggttgacttgccagagtcgacatggccaat 43066320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 43045501 - 43045559
Alignment:
Q  2 gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgac 60  Q
    ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||    
T  43045501 gcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgac 43045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 45983291 - 45983246
Alignment:
Q  194 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 239  Q
    |||||||||||||||||||||  |||| ||||| ||||||||||||    
T  45983291 tctgccaattcaacacagaaagtaacaagacataagtaaaataaat 45983246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34691331 - 34691474
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| ||||||||||||    
T  34691331 agcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgacca 34691430  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaat 144  Q
    || || |||||||||||||||| |||||||||||||||||||||    
T  34691431 gccgtagttgacttcccagagttgacatgaccaataaacacaat 34691474  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34713743 - 34713886
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| ||||||||||||    
T  34713743 agcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgacca 34713842  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaat 144  Q
    || || |||||||||||||||| |||||||||||||||||||||    
T  34713843 gccgtagttgacttcccagagttgacatgaccaataaacacaat 34713886  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 16232680 - 16232823
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||| ||| || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| | |||||||||     
T  16232680 agcatacttgaatgaacgcatcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttgaatacctccaagcttgtaaagcaaatgaccg 16232779  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaat 144  Q
    ||||| |||||||||||||| | ||||||||||||||| |||||    
T  16232780 gcagtagttgacttcccagaattgacatgaccaataaagacaat 16232823  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33861345 - 33861495
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| |||||||||||| |||  |||| ||| ||||||| |||||  |  |||||||| | ||| | ||||| ||||||||||| || |||||||||     
T  33861345 agcatacttgaatgaacacttgtcgatctgagcagcttcttcctcaagactgtcaatgacatgcttgtcaatacatccaagcttgtggagcaaatgaccg 33861444  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 151  Q
    |  |||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  33861445 gttgtggttgacttcccagagtcaacatgaccaataaccacaatgttaata 33861495  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 33861558 - 33861603
Alignment:
Q  194 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 239  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  33861558 tctgccaattcaacaaagaaaacaacaagacatgagtaaaataaat 33861603  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4231973 - 4232107
Alignment:
Q  1 agcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgacca 100  Q
    |||||| || ||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||||||||||||| ||||||    
T  4231973 agcatacttaaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgacca 4232072  T
Q  101 gcagtggttgacttcccagagtcgacatgaccaat 135  Q
    |  || ||||||||||||||||||||||| |||||    
T  4232073 gtggtagttgacttcccagagtcgacatggccaat 4232107  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 19964696 - 19964623
Alignment:
Q  76 tccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaa 149  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  19964696 tccaagcttgtggatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaa 19964623  T

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Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 16352207 - 16352298
Alignment:
Q  74 cctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttccttt 165  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||| |||||| ||||||  ||||||| ||||    
T  16352207 cctccaagcttgtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttttcttt 16352298  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 7528868 - 7528735
Alignment:
Q  2 gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccag 101  Q
    ||||| |||||||||| | |||| |||||||| ||||| |||||||||| ||| || ||   ||| | ||||||||| |||||||||||||| |||||||    
T  7528868 gcatacttgaatgaacgcttgttcatctcagcagcttccttctcaaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccag 7528769  T
Q  102 cagtggttgacttcccagagtcgacatgaccaat 135  Q
      || ||||| || |||||||||||||| |||||    
T  7528768 ttgttgttgattttccagagtcgacatgtccaat 7528735  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 7519478 - 7519364
Alignment:
Q  21 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 120  Q
    |||| |||||||| ||||| ||||| |||| ||| || ||   ||| | ||||||||| |||||||||||||| |||||||  || ||||| || |||||    
T  7519478 tgttcatctcagcagcttccttctcgaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccaga 7519379  T
Q  121 gtcgacatgaccaat 135  Q
    ||||||||| |||||    
T  7519378 gtcgacatgtccaat 7519364  T

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