View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_low_9 (Length: 705)
Name: NF11758_low_9
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_9 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 56 - 618
Target Start/End: Complemental strand, 33713071 - 33712510
Alignment:
| Q |
56 |
ggttggaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggttccatgtttgaatgccataaaaaatagttacaaacagtcccaca |
155 |
Q |
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| T |
33713071 |
ggttggaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggtgccatgtttgaatgccataaaaaatagttacaaacagtcccaca |
33712972 |
T |
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| Q |
156 |
ttgaaggtgctgaaacaacaagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggctgaataagtcacgttgt |
255 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33712971 |
ttgaaggtgctgaaacaaccagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggcttaataagtcacgttgt |
33712872 |
T |
|
| Q |
256 |
tctgtccacttaattctgttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712871 |
tctgtccacttaattctgttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttat |
33712772 |
T |
|
| Q |
356 |
atttttctattgttgagtcttttcaaaaatcaatgtattgaataaggagtccctaannnnnnnnngtttcttctttggacagaatcatagacaatatgat |
455 |
Q |
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| T |
33712771 |
atttttctattgttgagtcttttcaaaaatcaatgtattgaataaggagtccctaatttttttttgtttcttctttggacagaatcatagacaatatgat |
33712672 |
T |
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| Q |
456 |
catatttaacttcgctataaacactaaactctattctattcctaatttcctatgtaagatcatttgaaaaaac-aaaattttgtccttcaatataagact |
554 |
Q |
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| T |
33712671 |
catatttaacttcgct-taaacactaaactctattctattcctaatttcctatgtaagatcatttgaaaaaacaaaaattttgtccttcaatataagact |
33712573 |
T |
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| Q |
555 |
atctatgcannnnnnnnctttctcttttcaagtatacatcttatatcttgttaacactaaatat |
618 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712572 |
atctatgcatttttttt-tctctcttttcaagtatacatcttatatcttgttaacactaaatat |
33712510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 33712274 - 33712228
Alignment:
| Q |
616 |
tattgcaccaacaacttttctctcaattggatggaccgaggtctctg |
662 |
Q |
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| T |
33712274 |
tattgcaccaacaacttttctctcaattggatggaccgaggtctctg |
33712228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 21252245 - 21252284
Alignment:
| Q |
18 |
aggacaatggatcattttgtgtaattggtctcaaaagtgg |
57 |
Q |
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| T |
21252245 |
aggacagtggatcattttgtgtaattggtctcaacagtgg |
21252284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 4661 - 4700
Alignment:
| Q |
18 |
aggacaatggatcattttgtgtaattggtctcaaaagtgg |
57 |
Q |
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| T |
4661 |
aggacaatggatcactttgtgtaattggtcttaaaagtgg |
4700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 63980 - 64017
Alignment:
| Q |
67 |
ttgcatttaatttcaaaattatt-gatagaattggaag |
103 |
Q |
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| T |
63980 |
ttgcatttaatttcaaaattattcgatagaattggaag |
64017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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