View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11759_high_2 (Length: 238)
Name: NF11759_high_2
Description: NF11759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11759_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 51120799 - 51120576
Alignment:
| Q |
1 |
atggcggtacttaaaaccaagcgactgcaaatcgggaaaacaatcggcgatgaggaaaaagtcattgcgatcaatataatttacgttgaaaaaagtgagt |
100 |
Q |
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| T |
51120799 |
atggcagtacttaaaaccaagcgactgcaaatcgggaaaacaatcggcgatgaggaaaaagtcattgcgatcaatataatttacgttgaaaaaagtgagt |
51120700 |
T |
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| Q |
101 |
gaagtcaaagttgtaacattttgagagaaagcgcgcaatccattggcaagattggtgggtgtgttggagagatggagtgatcgaagtttcaatgggaaaa |
200 |
Q |
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| T |
51120699 |
gaagtcaaagttgtaacattttgagagaaagctcgcaatccattggcaagattggtgggtgtgttggagagatggagtgatcgaagtttcaatgggaaaa |
51120600 |
T |
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| Q |
201 |
gagatatttggatgagaagtaagt |
224 |
Q |
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| T |
51120599 |
gagatatttggatgaaaagtaagt |
51120576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 181
Target Start/End: Complemental strand, 8186468 - 8186322
Alignment:
| Q |
35 |
ggaaaacaatcggcgatgaggaaaaagtcattgcgatcaatataatttacgttgaaaaaagtgagtgaagtcaaagttgtaacattttgagagaaagcgc |
134 |
Q |
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| T |
8186468 |
ggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactc |
8186369 |
T |
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| Q |
135 |
gcaatccattggcaagattggtgggtgtgttggagagatggagtgat |
181 |
Q |
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| T |
8186368 |
gcaatccatttgcaggaatggtgggtttgttagagagattgagtgat |
8186322 |
T |
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