View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11759_low_1 (Length: 391)
Name: NF11759_low_1
Description: NF11759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11759_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 6604926 - 6605284
Alignment:
| Q |
19 |
agaaaagggtgccgatatctcaggttataaaattgacacatcacttaagtaacataattatattgaaagcattttggcatacttttttccctctcctttg |
118 |
Q |
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| T |
6604926 |
agaaaagggtgccgatatctcaggttataaaattgacacatcacttaagtaacataattatattgaaagcattttggcatacttttttccctctcctttg |
6605025 |
T |
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| Q |
119 |
ctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttatt |
218 |
Q |
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| T |
6605026 |
ctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttatt |
6605125 |
T |
|
| Q |
219 |
ataactatctcagcctaattaaaccaaccaactatctcactaaataagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattgagt |
318 |
Q |
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| T |
6605126 |
ataactatctcagcctaattaaaccaaccaactatctcactaaataagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattgagt |
6605225 |
T |
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| Q |
319 |
aaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaaatatgatgtc |
377 |
Q |
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| T |
6605226 |
aaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaaatatgatgtc |
6605284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 35442557 - 35442638
Alignment:
| Q |
122 |
ctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatactt |
203 |
Q |
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| T |
35442557 |
ctttataggtaaaaaaaggttgggtgaaaaaggttcagcaagaatggagcatccttgagaaaagtcttcctggtacatactt |
35442638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 3698611 - 3698258
Alignment:
| Q |
19 |
agaaaagggt-gccgatatctcaggttataaaattgacacatcacttaagtaacataattatattgaaagcattttggcatacttttttccctctccttt |
117 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
3698611 |
agaaaagggttgccaatatctcaggttataaaattgacacatcacttaagtaacataattatattgaaagcattttggctta-ttttttccctctccttt |
3698513 |
T |
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| Q |
118 |
gctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3698512 |
gctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatacttctcacttta-ttat |
3698414 |
T |
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| Q |
218 |
tataactatctcagcctaattaaaccaacc-aactatctcactaaataagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattga |
316 |
Q |
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|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3698413 |
tataactatctcagtcaaattaaaccaaccaaactatctcactaaataagcaatgtttattgtcaattaatatttaatctgaaaataagtagcctattga |
3698314 |
T |
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| Q |
317 |
gtaaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaaatatg |
372 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
3698313 |
gtaaataaatgtccgagttaatttacttgcaagaaagggaaatcactcgaaatatg |
3698258 |
T |
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