View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11759_low_2 (Length: 345)

Name: NF11759_low_2
Description: NF11759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11759_low_2
NF11759_low_2
[»] chr1 (1 HSPs)
chr1 (1-340)||(24975691-24976029)
[»] chr5 (4 HSPs)
chr5 (1-340)||(23490410-23490744)
chr5 (1-239)||(13537623-13537860)
chr5 (1-128)||(42790481-42790608)
chr5 (199-276)||(42790657-42790733)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-340)||(24328-24666)
[»] chr6 (3 HSPs)
chr6 (1-338)||(27963588-27963924)
chr6 (1-279)||(18733957-18734234)
chr6 (122-300)||(19861955-19862132)
[»] chr4 (5 HSPs)
chr4 (26-330)||(18278375-18278678)
chr4 (1-163)||(3844146-3844307)
chr4 (1-226)||(15311016-15311241)
chr4 (35-166)||(10268088-10268219)
chr4 (230-277)||(10268273-10268320)
[»] scaffold0008 (1 HSPs)
scaffold0008 (7-288)||(251332-251612)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-303)||(26662-26963)
[»] chr2 (2 HSPs)
chr2 (55-279)||(23927793-23928015)
chr2 (1-92)||(27345494-27345585)
[»] scaffold0433 (1 HSPs)
scaffold0433 (1-163)||(10853-11014)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-255)||(8027-8286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-304)||(386543-386845)
[»] scaffold0063 (1 HSPs)
scaffold0063 (97-279)||(39524-39705)
[»] chr8 (2 HSPs)
chr8 (95-188)||(24039908-24040001)
chr8 (1-41)||(16093051-16093091)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24976029 - 24975691
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  24976029 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaacgccaaaggtggccttcctccgtggttgg 24975930  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||| | | |||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||||| | ||||||||| ||| ||||||||  ||||    
T  24975929 agggggctagcaagtttacactcatgagttcctcgaactttctcttcatgctctccatggagacgttcagtgttcctcccgtgataacgttggcggaggg 24975830  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||| ||    
T  24975829 gaactgctcccaggtgcatgaata-aggggtgatttccacgttgtcagggaagtcaccgagatgttctatggacatggcaactgtcttaccaggctctga 24975731  T
Q  301 gccgtcaatgatgagttcgacggtctttctctctgcttct 340  Q
    ||| |||| ||| || |||||||| ||||| |||||||||    
T  24975730 gccatcaacgataagctcgacggtttttctttctgcttct 24975691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 23490410 - 23490744
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |    
T  23490410 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaagaagttctgaatcatagaatgccaaaggtggccttcctccgtggttcg 23490509  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    || || | | |||    ||||||||||||||||||||||||||||||||||| |||||||||| ||| | | ||||||| | ||| ||||||||  ||||    
T  23490510 agagggctagcaa----acactcatgagttcctcgaactttctcttcatgctccccatggagacgtttagtgttcctcctgtgataacgttggcggaggg 23490605  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  23490606 gaactgctcccaggtgcatgagtaacggg-tgatttccacgttgtcagggaaatcaccgagatgttccacagacatggcaactatcttaacaggctcgga 23490704  T
Q  301 gccgtcaatgatgagttcgacggtctttctctctgcttct 340  Q
    | |||| | |||||| |||||||||||||| || ||||||    
T  23490705 gtcgtccacgatgagctcgacggtctttctttccgcttct 23490744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13537623 - 13537860
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||   ||||||    
T  13537623 gccattgatgctcgcacgagcaaaggaatgactgaatttgaaactccaccaggaagttttgaatcatagaatgccaaaggtggtcttcctctgtggttgg 13537722  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| | ||||||||| ||||||||||||| ||||    
T  13537723 agggagccagcaagttgacactcatgagttcctcaaactttctcttcatgcttcccatggagacattcagtgttcctcccgtgatgacgttggcagaggg 13537822  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttcca 239  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13537823 gaactgctcccaggtgcatgagta-aggggtgatttcca 13537860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 42790481 - 42790608
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||| |||||||  |||| ||| |||||||||| |||||||| |||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||||||    
T  42790481 gccattgatgctcatacgaacaatggaatggctgcatttgaagatccaccgggaagttctgagtcgtagaacgccaagggtggtctccctccgaggttgg 42790580  T
Q  101 aggggaccaacaagttgacactcatgag 128  Q
    | ||| ||| ||||||||| ||||||||    
T  42790581 aaggggccagcaagttgacgctcatgag 42790608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 42790657 - 42790733
Alignment:
Q  199 gggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacat 276  Q
    |||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||    
T  42790657 gggaactgttcccaagtgcatgagtaggggg-tgattcccacgttgtcagggaaatcacccagctgttccacggacat 42790733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24666 - 24328
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||||| | || || |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  24666 gccatcgatgcttgtactagaaaaggaatggcttagtttgaagctccgccaggaagttctgaatcatagaatgccaaaggtggccttcctccgtgattgg 24567  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||| | | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| | ||||||||| ||| |  |||||  ||||    
T  24566 agggggctagcaagttgacactcatgagttcctcgaacttcctcttcatgctccccatggagacgttcagtgttcctcccgtgataaaattggcggaggg 24467  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    |||||||| ||| |||||||||||   |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  24466 gaactgctgccacgtgcatgagta-aagggtgatttccacgttctcaggcaaatcaccgagatgttccacggacatggcaactgtcttaccagactcaga 24368  T
Q  301 gccgtcaatgatgagttcgacggtctttctctctgcttct 340  Q
    ||| ||||||||||| |||||||||||||| || ||||||    
T  24367 gccatcaatgatgagctcgacggtctttctttccgcttct 24328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 27963588 - 27963924
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  27963588 gccatcgatgctcgtacgagcaaaggaatggctgaatttgaagctctacaaggaagttctgaatcatagaacgccaaaggtggccttcctccgtggttgg 27963687  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||| | | ||||||||||||||||||||| || || |||||||||||||| |||||||||| ||| |   ||||||||| ||| ||||||||  ||||    
T  27963688 agggggctagcaagttgacactcatgagttcttcaaaatttctcttcatgctccccatggagacgtttagcgttcctcccgtgataacgttggcggaggg 27963787  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
     ||||| ||||| |||||||||||  |||||| |||||| |||||| ||||||||||||||||||| ||||||||||| ||||  |||||||||||||||    
T  27963788 aaactgttcccacgtgcatgagta-aggggtggtttccaagttgtccgggaaatcaccgagatgtttcacggacatggaaactgccttaccaggctcgga 27963886  T
Q  301 gccgtcaatgatgagttcgacggtctttctctctgctt 338  Q
    |||||| | || ||| |||||||||||||| |||||||    
T  27963887 gccgtctacgacgagctcgacggtctttctttctgctt 27963924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 18733957 - 18734234
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||| |||||||| |||||||| |||||| |||||||||| |||||||| || ||||||||||  ||||| |||| ||||||  | ||    |||||||    
T  18733957 gccattgatgctcgtacgagcaacggaatgactgaatttgaggctccacctggtagttctgaattgtagaacgccagaggtggtttacccttgaggttgg 18734056  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||  ||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| |   ||||||||| ||||||||||||| ||||    
T  18734057 agggttccagcaagttgacacttttgagttcttcgaactttctcttcatgcttcccatggagatgttgaccgttcctcccgtgatgacgttggcagaggg 18734156  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc 279  Q
     ||||||||| ||||| ||||||| |||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||    
T  18734157 aaactgctcctaggtgaatgagta-gggggtgatttccaagttatcaaggaaatcacccagatgttcaacggacatggc 18734234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 19862132 - 19861955
Alignment:
Q  122 tcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatga 221  Q
    ||||||| || ||||| || ||||||||| |||||||||||||||  |   ||||||  | |||| |||||||  ||||||||||||||||||||| |||    
T  19862132 tcatgagctcttcgaatttcctcttcatgtttcccatggagatgtctagcgttcctcttgtgatgccgttggcggaggggaactgctcccaggtgcttga 19862033  T
Q  222 gtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    |||| ||||||||||| |  |  | | |||||||||| |||||||| ||||| |||| |||| |||| | |||||||||    
T  19862032 gtag-ggggtgatttctatatcttgaaggaaatcacccagatgttcaacggatatggaaactgtcttgcgaggctcgga 19861955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 26 - 330
Target Start/End: Complemental strand, 18278678 - 18278375
Alignment:
Q  26 gaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcat 125  Q
    |||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  || | |||||| | | |||||||| ||||||    
T  18278678 gaatgggtaaatttgaagctccatcgggaagttctgaatcatagaatgccaaaggtggccttcctccgtgggtagagggggctagcaagttgatactcat 18278579  T
Q  126 gagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtag 225  Q
    ||| |||| ||||||||||||||||||  ||||||||| ||||  | ||||||||| ||||||||||||  ||||||| || |||||||||||||||||     
T  18278578 gagatccttgaactttctcttcatgctgtccatggagacgttcggtgttcctcccgtgatgacgttggcggaggggaaatgttcccaggtgcatgagta- 18278480  T
Q  226 gggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtc 325  Q
      |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||| |||||||||    
T  18278479 acgggtgatttcgacgttgtcagggaaatcaccgagatgttccacggacttggcgactgtcttaccaggctcagagccgtcaacgatgagctcgacggtc 18278380  T
Q  326 tttct 330  Q
    |||||    
T  18278379 tttct 18278375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3844146 - 3844307
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||   ||||||    
T  3844146 gccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtggttgg 3844244  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga 163  Q
    | ||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3844245 aaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga 3844307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15311016 - 15311241
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||  | || ||||| ||||||||||| |||||||||  |||||    
T  15311016 gccatcgatgctcgcacgagcaaaggaatggcaaaatttgaagctccaccgggcagttcgtagtcgtagaacgccaaaggtggtcttcctccattgttgg 15311115  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||| ||| ||||||||| |||||||| |  | ||| ||  |||||||| ||||||||||||||| || ||||||||| | ||||||||||||  ||||    
T  15311116 agggggccagcaagttgacgctcatgagctttttgaatttcttcttcatgattcccatggagatgtccagtattcctcctgtgatgacgttggcggaggg 15311215  T
Q  201 gaactgctcccaggtgcatgagtagg 226  Q
    ||| || ||||| |||||||| ||||    
T  15311216 gaattgttcccatgtgcatgactagg 15311241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 10268088 - 10268219
Alignment:
Q  35 aatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctc 134  Q
    ||||||| |||||||| || |||||  | || ||||| |||||| |||| ||||||| | ||||||||||||||| ||||||||| |||||||| || ||    
T  10268088 aatttgaggctccaccgggcagttcgtagtcgtagaacgccaaaagtggtcttcctctatggttggaggggaccagcaagttgacgctcatgagctcttc 10268187  T
Q  135 gaactttctcttcatgcttcccatggagatgt 166  Q
    ||| || |||||||||||||||||||| ||||    
T  10268188 gaatttcctcttcatgcttcccatggaaatgt 10268219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 10268273 - 10268320
Alignment:
Q  230 gtgatttccacgttgtcagggaaatcaccgagatgttccacggacatg 277  Q
    |||||||| | |||||| ||||||||||| ||||||||||||||||||    
T  10268273 gtgatttctatgttgtcggggaaatcacccagatgttccacggacatg 10268320  T

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Target: scaffold0008 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 251332 - 251612
Alignment:
Q  7 gatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggagggga 106  Q
    ||||||||||||||||||||||||||||||||||| |||||||  || |||||||| || |||||||||| |||| | |||||||||  ||||||||||     
T  251332 gatgctcgcacgagcaaaggaatggctgaatttgaggctccactgggtagttctgagtcgtagaatgccataggtagtcttcctccattgttggaggggg 251431  T
Q  107 ccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactg 206  Q
    ||| || ||| || ||||| || || ||||||||||||||||||||||||||| |||||||||   |||| |||| ||||||||||||  |||| |||||    
T  251432 ccagcaggttcacgctcattagctcttcgaactttctcttcatgcttcccatgaagatgttcagcgttccgcccgtgatgacgttggcggagggaaactg 251531  T
Q  207 ctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttctt 288  Q
     ||||||||||||||||| ||||||||||||||| |||||||||||||  || |||||||||||||||||||| ||| ||||    
T  251532 ttcccaggtgcatgagta-gggggtgatttccacattgtcagggaaattgcccagatgttccacggacatggcgactatctt 251612  T

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Target: scaffold0034 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 26963 - 26662
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||||| || ||||||||||||||||  ||||||||||||||||||| ||||| || || ||||| || |||||||| ||||||||  ||||||    
T  26963 gccatcgatgcttgcgcgagcaaaggaatggcataatttgaagctccaccaggtagttcggagtcgtagaacgcgaaaggtggtcttcctccgtggttgg 26864  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||||| | ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| ||   |||||||   ||||||||||||| ||||    
T  26863 aggggactagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccagcgttcctcctatgatgacgttggcagaggg 26764  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    ||||||| || || |||||||||| | |||||||||| |  |  |||||||||||||| || |||||||| |||||||||||| |||| |||||||||||    
T  26763 gaactgcacctagctgcatgagta-gcgggtgatttctatatcttcagggaaatcacccagttgttccacagacatggcaactgtcttgccaggctcgga 26665  T
Q  301 gcc 303  Q
    |||    
T  26664 gcc 26662  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 279
Target Start/End: Original strand, 23927793 - 23928015
Alignment:
Q  55 agttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttc 154  Q
    |||||||| || ||||| ||||||||| | ||||||||| ||||||||||| ||| || ||||||||||||||| || ||||| ||||||||||||||||    
T  23927793 agttctgagtcgtagaacgccaaaggtagtcttcctccacggttggagggggccagcaggttgacactcatgagctcttcgaattttctcttcatgcttc 23927892  T
Q  155 ccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaat 254  Q
    ||||| |||||||||   ||||||||| ||||||||||||  |||| ||||| ||||||||||||| |||  ||||||||||||||||||||||||||||    
T  23927893 ccatgcagatgttcagcgttcctcccgtgatgacgttggcggagggaaactgttcccaggtgcatgtgta--ggggtgatttccacgttgtcagggaaat 23927990  T
Q  255 caccgagatgttccacggacatggc 279  Q
    | || |||||||||||  |||||||    
T  23927991 cgcccagatgttccacaaacatggc 23928015  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27345494 - 27345585
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctcc 92  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27345494 gccatcgatgcttgcacgagcaaaggaatggctgaatttgaagccccaccgggaagttctgaatcatagaatgccaaaggtggccttcctcc 27345585  T

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Target: scaffold0433 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 11014 - 10853
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||   ||||||    
T  11014 gccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtggttgg 10916  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga 163  Q
    | ||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10915 aaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga 10853  T

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Target: scaffold0192 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8027 - 8286
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| |||||||| | |||||    
T  8027 gccatcgatgctcgcacgagcaaatgaatggctgaatttgaacccccactaggcagttcagagtcgtagaatgccaagggtggtcttcctccgatgttgg 8126  T
Q  101 ag------gggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggc 194  Q
    |       ||||||| ||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || | | ||||||||| ||||||||||||    
T  8127 aatcaaaagggaccagcaaattgacactcatgagctcctcaaattttctattcatgcttcctatagagatatttactgttcctcccgtgatgacgttggc 8226  T
Q  195 ataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatc 255  Q
    | | |||||||| |||||||||||||||||  ||   ||||||||| ||||||||||||||    
T  8227 agaagggaactgttcccaggtgcatgagta-aggtacgatttccacattgtcagggaaatc 8286  T

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Target: scaffold0002 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 386543 - 386845
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 100  Q
    |||||||||||||  || |||||||| ||||| |||||||| ||||||| ||| || ||  | || | ||| | ||  ||||| ||||||||  ||||||    
T  386543 gccatcgatgctcatacaagcaaaggtatggcagaatttgaggctccactaggtagctccaagtcgtggaacgtcaggggtggtcttcctccgtggttgg 386642  T
Q  101 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 200  Q
    ||||||| || ||||| || ||| |||| || || || || ||||||||||||||||||||||||| |||  ||||||  | ||||| ||||||  ||||    
T  386643 aggggacaaaaaagttaacgctcgtgagctcttcaaatttcctcttcatgcttcccatggagatgtccaacgttcctctagtgatgatgttggcggaggg 386742  T
Q  201 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 300  Q
    |||||| |||||||| |||||||| ||||| |||||| | |||||| ||||||||| | |||||||||||  ||||||||||  | || |||||||||||    
T  386743 gaactgttcccaggttcatgagta-gggggcgatttcaaggttgtcggggaaatcatctagatgttccacaaacatggcaacagttttgccaggctcgga 386841  T
Q  301 gccg 304  Q
    ||||    
T  386842 gccg 386845  T

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Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 39705 - 39524
Alignment:
Q  97 ttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcat 196  Q
    ||||||||||||| || |||||| ||||||||||| || || ||||| |||||||||||||||||||||||||   ||||||||| |||||||||| |      
T  39705 ttggaggggaccagcaggttgacgctcatgagttcttcaaaatttcttttcatgcttcccatggagatgttcatcgttcctcccgtgatgacgttgacgg 39606  T
Q  197 aggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc 279  Q
    | || ||||| |||||| |||||||||||||    || ||||||||||||||| |||||||| | ||| |||||| |||||||    
T  39605 atggaaactgttcccagctgcatgagtagggtac-gacttccacgttgtcaggaaaatcacccaaatgatccacgtacatggc 39524  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 24039908 - 24040001
Alignment:
Q  95 ggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgac 188  Q
    ||||||||||||||| ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| |||  ||||||| | ||||||    
T  24039908 ggttggaggggaccagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccaacgttcctcctgtgatgac 24040001  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16093091 - 16093051
Alignment:
Q  1 gccatcgatgctcgcacgagcaaaggaatggctgaatttga 41  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  16093091 gccattgatgctcgcccgagcaaaggaatggctgaatttga 16093051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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