View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1175_high_14 (Length: 252)

Name: NF1175_high_14
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1175_high_14
NF1175_high_14
[»] chr1 (18 HSPs)
chr1 (3-223)||(3919395-3919612)
chr1 (2-89)||(39815442-39815526)
chr1 (2-83)||(36794711-36794792)
chr1 (2-89)||(29094636-29094723)
chr1 (2-91)||(22331445-22331534)
chr1 (2-85)||(44161678-44161761)
chr1 (2-59)||(37947138-37947195)
chr1 (2-57)||(4618740-4618795)
chr1 (2-89)||(5574163-5574250)
chr1 (2-89)||(7420730-7420817)
chr1 (2-57)||(8577422-8577477)
chr1 (43-90)||(49931552-49931599)
chr1 (2-89)||(50796098-50796184)
chr1 (2-60)||(32966363-32966421)
chr1 (2-91)||(43640873-43640962)
chr1 (2-59)||(50436241-50436297)
chr1 (2-54)||(35030685-35030737)
chr1 (1-53)||(49615199-49615251)
[»] chr3 (23 HSPs)
chr3 (2-97)||(1834602-1834698)
chr3 (2-81)||(49886759-49886838)
chr3 (2-89)||(44689899-44689986)
chr3 (3-83)||(21481861-21481940)
chr3 (2-89)||(48117432-48117519)
chr3 (2-93)||(50745645-50745736)
chr3 (2-59)||(51385358-51385415)
chr3 (3-99)||(20380768-20380863)
chr3 (8-59)||(9158954-9159005)
chr3 (7-86)||(26283805-26283884)
chr3 (2-85)||(27198046-27198129)
chr3 (2-89)||(47683886-47683973)
chr3 (43-85)||(19150344-19150386)
chr3 (2-92)||(29555726-29555816)
chr3 (2-92)||(35272123-35272213)
chr3 (1-79)||(37852503-37852581)
chr3 (2-59)||(16295560-16295617)
chr3 (8-89)||(29057750-29057831)
chr3 (2-59)||(35368707-35368764)
chr3 (2-83)||(43460484-43460565)
chr3 (42-90)||(5393858-5393906)
chr3 (2-90)||(31300898-31300986)
chr3 (2-90)||(43149230-43149318)
[»] chr4 (33 HSPs)
chr4 (2-89)||(36081907-36081994)
chr4 (2-92)||(53763696-53763786)
chr4 (2-89)||(41170868-41170955)
chr4 (2-92)||(43864129-43864219)
chr4 (2-76)||(33914239-33914313)
chr4 (2-59)||(53781755-53781812)
chr4 (1-89)||(9096032-9096119)
chr4 (2-89)||(24310409-24310496)
chr4 (2-59)||(3475964-3476021)
chr4 (2-59)||(29577354-29577411)
chr4 (42-83)||(32058270-32058311)
chr4 (2-91)||(36488356-36488444)
chr4 (2-59)||(46355209-46355266)
chr4 (2-90)||(15596492-15596579)
chr4 (5-89)||(27407960-27408044)
chr4 (2-90)||(45678359-45678447)
chr4 (8-59)||(4878069-4878120)
chr4 (2-61)||(4896416-4896475)
chr4 (2-89)||(43358709-43358795)
chr4 (2-60)||(3968981-3969039)
chr4 (3-89)||(18944382-18944468)
chr4 (2-92)||(38160658-38160748)
chr4 (2-91)||(1987599-1987688)
chr4 (43-92)||(3078933-3078982)
chr4 (2-59)||(9032876-9032933)
chr4 (30-91)||(18634825-18634886)
chr4 (2-59)||(37775345-37775402)
chr4 (2-83)||(46791885-46791966)
chr4 (2-59)||(50291378-50291435)
chr4 (2-59)||(53091148-53091205)
chr4 (2-90)||(22893964-22894052)
chr4 (2-90)||(22945632-22945720)
chr4 (13-85)||(46799862-46799934)
[»] chr8 (15 HSPs)
chr8 (5-91)||(34247873-34247959)
chr8 (2-88)||(9305886-9305972)
chr8 (2-86)||(1422593-1422677)
chr8 (2-76)||(24616441-24616515)
chr8 (2-89)||(41776271-41776358)
chr8 (2-59)||(23709072-23709129)
chr8 (2-89)||(25430742-25430829)
chr8 (2-89)||(37471739-37471826)
chr8 (2-60)||(32234369-32234427)
chr8 (2-59)||(24503013-24503070)
chr8 (2-59)||(27300442-27300499)
chr8 (2-59)||(35701761-35701818)
chr8 (2-59)||(42651016-42651073)
chr8 (2-93)||(7900385-7900477)
chr8 (49-85)||(20996178-20996214)
[»] chr7 (14 HSPs)
chr7 (2-89)||(7295563-7295650)
chr7 (2-83)||(44185272-44185353)
chr7 (2-90)||(23034200-23034288)
chr7 (2-93)||(41910069-41910160)
chr7 (3-55)||(39533308-39533359)
chr7 (2-89)||(22331099-22331186)
chr7 (5-88)||(41538579-41538662)
chr7 (2-89)||(47945079-47945166)
chr7 (2-89)||(47950509-47950596)
chr7 (5-91)||(12141983-12142068)
chr7 (2-92)||(25887679-25887768)
chr7 (6-54)||(41227175-41227223)
chr7 (2-93)||(45335958-45336050)
chr7 (42-90)||(48814832-48814880)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-89)||(48750-48837)
[»] chr5 (17 HSPs)
chr5 (2-88)||(12612906-12612992)
chr5 (7-89)||(35924371-35924453)
chr5 (2-90)||(39032491-39032579)
chr5 (2-90)||(39595370-39595457)
chr5 (2-89)||(19127220-19127306)
chr5 (2-61)||(28811524-28811583)
chr5 (2-88)||(125188-125273)
chr5 (2-56)||(5043021-5043075)
chr5 (43-93)||(10008536-10008586)
chr5 (3-89)||(10059663-10059749)
chr5 (2-59)||(5005209-5005266)
chr5 (2-55)||(22653735-22653788)
chr5 (2-59)||(35595904-35595961)
chr5 (2-59)||(37821059-37821116)
chr5 (2-59)||(38919942-38919999)
chr5 (3-91)||(23991328-23991416)
chr5 (2-54)||(35616724-35616776)
[»] chr6 (8 HSPs)
chr6 (2-83)||(7303999-7304080)
chr6 (2-89)||(19713090-19713177)
chr6 (2-89)||(6997438-6997525)
chr6 (2-59)||(608579-608636)
chr6 (8-61)||(1897788-1897841)
chr6 (2-59)||(17442918-17442975)
chr6 (42-83)||(25109178-25109219)
chr6 (5-57)||(34792105-34792157)
[»] chr2 (28 HSPs)
chr2 (2-57)||(4114352-4114407)
chr2 (2-89)||(35518371-35518458)
chr2 (3-89)||(32755775-32755861)
chr2 (2-59)||(1151625-1151682)
chr2 (2-90)||(694365-694453)
chr2 (2-89)||(30340089-30340177)
chr2 (2-89)||(11828708-11828795)
chr2 (2-89)||(22296017-22296104)
chr2 (2-89)||(35705805-35705892)
chr2 (2-89)||(45202020-45202107)
chr2 (5-83)||(24491571-24491649)
chr2 (2-60)||(26273270-26273328)
chr2 (8-89)||(35007989-35008070)
chr2 (2-91)||(11229208-11229296)
chr2 (2-59)||(13881191-13881248)
chr2 (2-59)||(14021316-14021373)
chr2 (12-89)||(23141460-23141537)
chr2 (12-89)||(23553250-23553327)
chr2 (40-89)||(28508479-28508528)
chr2 (8-89)||(35203637-35203718)
chr2 (37-86)||(36643758-36643806)
chr2 (2-57)||(3366127-3366182)
chr2 (1-57)||(3839505-3839561)
chr2 (44-92)||(11175132-11175180)
chr2 (2-90)||(26387718-26387806)
chr2 (9-85)||(36763412-36763488)
chr2 (9-89)||(38533086-38533166)
chr2 (2-92)||(39744480-39744569)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-92)||(145143-145233)
[»] scaffold0058 (1 HSPs)
scaffold0058 (2-59)||(3039-3096)
[»] scaffold0076 (1 HSPs)
scaffold0076 (2-61)||(11288-11347)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 3919395 - 3919612
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatatgttttatat 102  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||  |||||||||    
T  3919395 tctctattgtttttgaccaatgagagaagagaataataaagttgtcccaaaaattgtttaaaaagggttgtacaaatatcattactcat--gttttatat 3919492  T
Q  103 gaacattatgattaataatcatagaatacttcatttacactctacactttattgtgtttatgattaaaaaagataagtaagcttttccattcttctcctc 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||| |||    
T  3919493 gaacattatgattaataatcatataatacttcatttacactctacactttattgtgtttatgattaaaaaagat-ggtaagcttttccgttcttcttctc 3919591  T
Q  203 ctaaatccttcatccaaatat 223  Q
     ||||||||||||||||||||    
T  3919592 gtaaatccttcatccaaatat 3919612  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 39815442 - 39815526
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||| |||||||||||||| |||||||||||||||| |   ||||||||||||||||||||| ||||||||||||||||||||    
T  39815442 ctctctattttttttgaccaatgagagaagagaataataagat---cccaaaagttgtttaaaaagggttgtacaaatatcattactc 39815526  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 36794711 - 36794792
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    ||||||||||||||||||||| ||||  ||||||||| || ||||| |||||| |||||| ||||  |||||||||||||||    
T  36794711 ctctctattgtttttgaccaacgaaaagagagaataacaaagttgttccaaaaattgtttcaaaaaaattgtacaaatatca 36794792  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 29094723 - 29094636
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||| |||||||||||  |||||||||| |  |||||||||||||||||||||| | |||||  |||| |||||||||||||||    
T  29094723 ctctctattgattttgaccaat--aagaagagaacacaataaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcattactc 29094636  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 22331445 - 22331534
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    |||||||||  ||| ||| |||||||  ||||||||  ||||||| ||||||| |||| | |||||| ||||||||||||||||||||||    
T  22331445 ctctctattactttagacaaatgaaaagagagaatagcaaggttgacccaaaaattgtctcaaaagggttgtacaaatatcattactcat 22331534  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 44161761 - 44161678
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    |||||||||||||||||||||| |||  ||||||||| ||| |||| || ||| || | | |||||| ||||||||||||||||    
T  44161761 ctctctattgtttttgaccaattaaaatagagaataacaagattgtgccgaaaattatcttaaaagggttgtacaaatatcatt 44161678  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 37947195 - 37947138
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| |||||||||||||||||| |  |||||| || ||||||||||||||||||||    
T  37947195 ctctccattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgt 37947138  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 4618740 - 4618795
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagtt 57  Q
    ||||| ||| |||||||||||||||| ||||||| || |||||| |||||||||||    
T  4618740 ctctccattatttttgaccaatgaaaaaagagaacaacaaggttatcccaaaagtt 4618795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5574250 - 5574163
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||||||||||| ||| ||||  | ||||| |||||||||||| || | | ||| | ||||| ||||||||| |||||    
T  5574250 ctctctattgtttttgaccaataaaaaaagaacacaataaagttgtcccaaaaattatatcaaacgaattgttcaaatatcactactc 5574163  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7420730 - 7420817
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||| ||||||||| | | ||||||| || || ||||||| |||||||||    |||  |||||||||||||||||||||    
T  7420730 ctctctattgttcttgaccaataagaaaagagaagaaaaaagttgtcctaaaagttgtcacgaaataattgtacaaatatcattactc 7420817  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 8577477 - 8577422
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagtt 57  Q
    ||||| |||||||||||||||||| |  |||||| || ||||||||||||||||||    
T  8577477 ctctccattgtttttgaccaatgagaatagagaacaacaaggttgtcccaaaagtt 8577422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 49931599 - 49931552
Alignment:
Q  43 gttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    |||||| ||||||||||| ||||| |||||||||||||||||| ||||    
T  49931599 gttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctca 49931552  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 50796098 - 50796184
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||| || ||||||||||||| |||||||||  |||||||||||||| |||||  ||||||  |||| |||||| || |||||    
T  50796098 ctctctattattattgaccaatgaaa-aagagaatatcaaggttgtcccaaatgttgtacaaaaagagttgttcaaataacactactc 50796184  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 32966363 - 32966421
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtt 60  Q
    ||||| |||||||||||||||| |||  |||||| ||| |||||||| |||||||||||    
T  32966363 ctctccattgtttttgaccaataaaaagagagaaaaatgaggttgtcacaaaagttgtt 32966421  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 43640962 - 43640873
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    ||||| ||||||||||||||||||||  |||||| ||| ||||||||   |||||||||   ||| | |||| ||||||||||| |||||    
T  43640962 ctctccattgtttttgaccaatgaaaagagagaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctcat 43640873  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 50436241 - 50436297
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||| |||||||||| ||||||||||  | |||||| ||||||||||    
T  50436241 ctctctattgtttttaaccaatgaaa-aagagaataaagaagttgtcacaaaagttgt 50436297  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 35030737 - 35030685
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaa 54  Q
    ||||| |||||||||||||||| ||| ||||||| || |||||||| ||||||    
T  35030737 ctctccattgtttttgaccaataaaaaaagagaacaacaaggttgtaccaaaa 35030685  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49615251 - 49615199
Alignment:
Q  1 cctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaa 53  Q
    |||||||||| |||||||||||||| | ||||||| ||||| |||||| ||||    
T  49615251 cctctctattatttttgaccaatgagaaaagagaacaataaagttgtctcaaa 49615199  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 1834602 - 1834698
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc-atatgttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  1834602 ctctctattgtttttgaccaatgaaagaagagaataataagattgtcccaaaagttatttaaaaagggttgtacaaatatcattactctatatgttt 1834698  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 49886759 - 49886838
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatat 81  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  49886759 ctctctattgtttttaaccaataaaaaaagagaataataaggttgtcctaaaagttgtttaaaaatagttgtacaaatat 49886838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 44689899 - 44689986
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||||||||||| |||  |||  | || |||||||||||||||||||||  ||||| ||||| ||||||||| |||||    
T  44689899 ctctctattgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaagttgttccaaaagaattgttcaaatatcactactc 44689986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 21481861 - 21481940
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    ||||||||||||||||||||||| |  |||||| ||| |||||||| |||||||||| |||| ||| |||| |||||||||    
T  21481861 tctctattgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtataaatagg-ttgttcaaatatca 21481940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 48117432 - 48117519
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||||||||  |||| | || ||||||||||||||||||||   ||||   |||| |||||||||||||||    
T  48117432 ctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 48117519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 50745645 - 50745736
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatat 93  Q
    ||||| ||||||||||||||||||||  |||| | || ||||||||||||||| || |   ||||  ||||| |||||||||||||||||||    
T  50745645 ctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaaattatagcaaaaaaattgttcaaatatcattactcatat 50745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 51385415 - 51385358
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||||| || | ||||||||||||||||||    
T  51385415 ctctccattgtttttgaccaatgaaaagagagaacaacatggttgtcccaaaagttgt 51385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 20380863 - 20380768
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatatgtttta 99  Q
    |||| ||||||||||||||||||||   ||||| ||  | |||||| |||||||||||||||| || |||| ||||||||| ||||| ||| |||||    
T  20380863 tctccattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagttgtttaaaatgg-ttgttcaaatatcactactcttatttttta 20380768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 9159005 - 9158954
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||  |||| | || ||||||||||||||||||||    
T  9159005 attgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgt 9158954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 26283884 - 26283805
Alignment:
Q  7 tattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatta 86  Q
    |||||||||||| |||| ||| |||||||||| ||| ||||||||| ||||||    | | |||||||||||||||||||    
T  26283884 tattgtttttgatcaataaaaaaagagaataagaagattgtcccaagagttgtcatcagatgattgtacaaatatcatta 26283805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 27198129 - 27198046
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    ||||| ||||||||| ||||||||||  |||||| ||| ||||||||  ||||||||||   ||| |||||| |||||||||||    
T  27198129 ctctccattgtttttaaccaatgaaaagagagaaaaatgaggttgtcataaaagttgttagcaaatgattgttcaaatatcatt 27198046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 47683886 - 47683973
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||| |||||||||||||| | |  ||||||  | ||||||||| ||||||||||   |||| | ||||||||||||||||||||    
T  47683886 ctctctaatgtttttgaccaataagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactc 47683973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 19150344 - 19150386
Alignment:
Q  43 gttgtcccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||    
T  19150344 gttgtcacaaaagttgttaaaaaatgattgtacaaatatcatt 19150386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 29555816 - 29555726
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    |||||||||||||||||| |||  |||||||||| |  | ||||||||||||||||||||   |||||  |||| ||||||||| ||||||||    
T  29555816 ctctctattgtttttgactaat--aagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactcata 29555726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 35272123 - 35272213
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    ||||| |||||||||||||||| |||  |||||| ||  | |||||| || ||||||| ||||| | ||||| ||||||||| ||||||||    
T  35272123 ctctccattgtttttgaccaataaaaagagagaaaaaagaagttgtcacataagttgtctaaaatgaattgttcaaatatcactactcata 35272213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37852581 - 37852503
Alignment:
Q  1 cctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaat 79  Q
    |||||||||||||||| |  |||||||  ||||||||| |||||| |||||||| || | | |||||| ||||||||||    
T  37852581 cctctctattgtttttaattaatgaaaagagagaataacaaggttatcccaaaaattatatcaaaagggttgtacaaat 37852503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 16295560 - 16295617
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    |||||||||||||||||||||| |||  |||||| || || |||||| ||||||||||    
T  16295560 ctctctattgtttttgaccaataaaaagagagaacaacaaagttgtctcaaaagttgt 16295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 29057750 - 29057831
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||| |||| ||||||||||  |||| | || ||||||||||||||||||||   ||||  ||||| |||||||||||||||    
T  29057750 attgattttaaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 29057831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 35368707 - 35368764
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||| ||||||||||  |||| | || ||| ||||||||||||||||    
T  35368707 ctctctattgttttttaccaatgaaaagagagcacaacaagattgtcccaaaagttgt 35368764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 43460484 - 43460565
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    |||||||||||||||||||||| | |  |||||| |  |||| |||||||||||||||   |||| | ||||||||||||||    
T  43460484 ctctctattgtttttgaccaataagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatca 43460565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 5393858 - 5393906
Alignment:
Q  42 ggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||||||||||||||||   |||| |||||||||||||||||| ||||    
T  5393858 ggttgtcccaaaagttgtaagaaaatgattgtacaaatatcatttctca 5393906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 31300898 - 31300986
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    |||||||||||||||||||||| | | || |||| || || |||||||||| | ||||   |||| | |||| ||||||||||||||||    
T  31300898 ctctctattgtttttgaccaataacaaaaaagaacaacaaagttgtcccaagaattgtcataaaatggttgttcaaatatcattactca 31300986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 43149318 - 43149230
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||||||||||| | |  |||||| || |||||||| |||||||||||   ||||   |||| ||||||||||||||||    
T  43149318 ctctccattgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactca 43149230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 36081907 - 36081994
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  36081907 ctctctattgtttttgaccaatgagagaagagaataataaggttgtcccaaaagttgtttaaaaagggttgtacaagtatcattactc 36081994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 53763786 - 53763696
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    |||||||||  ||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53763786 ctctctatttattttgaccaatgagaaaaaagaataataaggttgtcccaaaagttgtttaaaaagggttgtacaaatatcattactcata 53763696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 41170868 - 41170955
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||||||||  | ||||||  |||||||||||||||||||| |||||| | ||||||| ||||||||||||    
T  41170868 ctctctattgtttttgaccaatgaaatgaaagaatagcaaggttgtcccaaaagttgtctaaaaatggttgtacatatatcattactc 41170955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 43864129 - 43864219
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    |||||||||| |||||||||||||||  | | ||||  ||||||||| ||| |||||| |||||||| ||||||| |||||||||||||||    
T  43864129 ctctctattgattttgaccaatgaaatgaaaaaatagcaaggttgtctcaatagttgtctaaaaagggttgtacatatatcattactcata 43864219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 33914313 - 33914239
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtaca 76  Q
    ||||||||||||||| ||||||||||  | ||||||  ||||||||||||| |||||| |||||||| |||||||    
T  33914313 ctctctattgtttttaaccaatgaaatgaaagaatagcaaggttgtcccaatagttgtctaaaaagggttgtaca 33914239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 53781812 - 53781755
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||| |||| ||||||||||||||||||||    
T  53781812 ctctccattgtttttgaccaatgaaaagagagcataacaaggttgtcccaaaagttgt 53781755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9096032 - 9096119
Alignment:
Q  1 cctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||| |||||||||||||||| ||| || |||| || |||||||| ||||||||||| | ||||  ||||| |||||||||||||||    
T  9096032 cctctccattgtttttgaccaataaaaaaa-agaacaacaaggttgtaccaaaagttgtatcaaaataattgttcaaatatcattactc 9096119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 24310496 - 24310409
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| |||||||||||| ||| ||| ||||| | || ||||||||||||||||||||   ||||  ||||| |||||||||||||||    
T  24310496 ctctccattgtttttgactaataaaaaaagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 24310409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 3475964 - 3476021
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||| |||||    
T  3475964 ctctctattgtttttgaccaatgaaaagaaagaaaaataaggttgtcacaaatgttgt 3476021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 29577411 - 29577354
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||||| || ||||||||||||||| ||||    
T  29577411 ctctccattgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaaattgt 29577354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 32058311 - 32058270
Alignment:
Q  42 ggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  32058311 ggttgtctcaaaagttgtttaaaatggattgtacaaatatca 32058270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 36488444 - 36488356
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    ||||| ||||||||| |||||| ||| ||||||| ||| |||||||||||||| ||||  |||||  ||||| ||||||||||| |||||    
T  36488444 ctctccattgtttttaaccaataaaa-aagagaacaatgaggttgtcccaaaaattgtacaaaaataattgttcaaatatcatttctcat 36488356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 46355266 - 46355209
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    |||||||||||| ||||||||||| | |||||||||  || |||||||||||||||||    
T  46355266 ctctctattgttattgaccaatgagaaaagagaataccaaagttgtcccaaaagttgt 46355209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 15596492 - 15596579
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||| ||||||||||| | ||||| ||  | |||||| |||||||||||||||| || |||| ||||||||| ||||||    
T  15596492 ctctccattgttttggaccaatgaaaaatgagaaaaaagaagttgtcacaaaagttgtttaaaatgg-ttgttcaaatatcactactca 15596579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 27408044 - 27407960
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||| |||    |||| || |||||||| ||| ||||||| | |||||| ||||||||| ||||||||||    
T  27408044 tctattgtttttgaccaataaaaaggaagaacaacaaggttgtaccacaagttgtctcaaaagggttgtacaaagatcattactc 27407960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 45678359 - 45678447
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||||||||||| |||  |||||| || |||||||| |||||||||||   ||||   |||| ||||||||||||||||    
T  45678359 ctctccattgtttttgaccaataaaaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactca 45678447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 4878069 - 4878120
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||  |||| | || ||||||||||||||||||||    
T  4878069 attgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgt 4878120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 4896475 - 4896416
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgttt 61  Q
    ||||| ||||||||||||||||||||  |||||| ||  |||||||| ||||||||||||    
T  4896475 ctctccattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgttt 4896416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 43358709 - 43358795
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||| ||||||||||| |||  |||||| || || ||||||  |||| ||||||||||| || ||||||||||||| |||||    
T  43358709 ctctctattgattttgaccaatcaaaatagagaaaaacaaagttgtcataaaaattgtttaaaaaaga-tgtacaaatatcactactc 43358795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 3968981 - 3969039
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtt 60  Q
    ||||||||| |||||||||||| ||||||||||| | ||| ||||||| |||| |||||    
T  3968981 ctctctattatttttgaccaatcaaagaagagaaaattaaagttgtccaaaaaattgtt 3969039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 18944382 - 18944468
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||| ||||||||||||||  |||||||||| |  ||||||||||||||||||||||   |||||  |||| ||||||||| |||||    
T  18944382 tctctaatgtttttgaccaat--aagaagagaacacaataaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 18944468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 38160748 - 38160658
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    ||||| |||||||||||| ||||||| ||||||| ||  | |||||| || ||||||| ||||| |  |||| ||||||||| ||||||||    
T  38160748 ctctccattgtttttgactaatgaaaaaagagaaaaaataagttgtcacataagttgtctaaaatgagttgttcaaatatcactactcata 38160658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 1987688 - 1987599
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    ||||| ||||||||||||||||||||  |||||| || || |||||| |||| |||||   |||| ||||||  |||||||| |||||||    
T  1987688 ctctccattgtttttgaccaatgaaaagagagaacaacaaagttgtctcaaaggttgtaccaaaatgattgtcaaaatatcactactcat 1987599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 3078933 - 3078982
Alignment:
Q  43 gttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    |||||| |||||||||||  |||| |||||||||||||||||| ||||||    
T  3078933 gttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctcata 3078982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 9032876 - 9032933
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| |||||||||||||||| ||| ||||||| || ||||||||| | ||||||||    
T  9032876 ctctccattgtttttgaccaataaaaaaagagaaaaacaaggttgtcactaaagttgt 9032933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 18634825 - 18634886
Alignment:
Q  30 agagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    |||||| ||||||||||||  |||| |||||| |||| | ||||| ||||||||||||||||    
T  18634825 agagaaaaataaggttgtcttaaaaattgtttcaaaatggttgtataaatatcattactcat 18634886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 37775402 - 37775345
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||| || ||||||||||| |  ||||||||| ||||||||| ||||||||||    
T  37775402 ctctctattattattgaccaatgataatagagaataacaaggttgtctcaaaagttgt 37775345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 46791966 - 46791885
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    ||||||||||||||||| ||||||    |||||| ||| |||||||| |||||||||| | |||||  |||| |||||||||    
T  46791966 ctctctattgtttttgatcaatgagtagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatca 46791885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 50291378 - 50291435
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||  |||||||||  | || ||||||||||||||||||||    
T  50291378 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgt 50291435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 53091205 - 53091148
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| |||||||||||||||| ||||||||||| ||  | |||||| ||||||||||    
T  53091205 ctctccattgtttttgaccaataaaagaagagaaaaaagaagttgtcacaaaagttgt 53091148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 22893964 - 22894052
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||||||||||| |||  |||| | || ||| ||||||||||||||||   ||||   |||| ||||||||||||||||    
T  22893964 ctctccattgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactca 22894052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 22945632 - 22945720
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||||||||||| |||  |||| | || ||| ||||||||||||||||   ||||   |||| ||||||||||||||||    
T  22945632 ctctccattgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactca 22945720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 46799862 - 46799934
Alignment:
Q  13 ttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    ||||||||||||| |  |||||| || ||||||||||||||| ||||   |||| |||||| |||||||||||    
T  46799862 ttttgaccaatgagaatagagaacaacaaggttgtcccaaaaattgtaccaaaatgattgttcaaatatcatt 46799934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 34247873 - 34247959
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    |||||||||||||||||||||||  |||||| || |||||||||||||||||||| | |||||| ||||||||||||||||||||||    
T  34247873 tctattgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaagttgtctcaaaagggttgtacaaatatcattactcat 34247959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 9305972 - 9305886
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattact 88  Q
    |||| |||||||||||| ||||||||  ||||||||  ||||||||| |||||||||| | ||| ||||||||||||||||||||||    
T  9305972 ctctatattgtttttgatcaatgaaaagagagaatatcaaggttgtctcaaaagttgtctcaaatggattgtacaaatatcattact 9305886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 1422677 - 1422593
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatta 86  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||| | ||||   |||| ||||||||||||    
T  1422677 ctctccattgtttttgaccaatgaaaaaatagaataacaaggttgtcccaaaagttgtatcaaaatagttgttcaaatatcatta 1422593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 24616441 - 24616515
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtaca 76  Q
    ||||||||||||||||||||||||||  | ||||||  ||||||||||||| | |||| |||||||| |||||||    
T  24616441 ctctctattgtttttgaccaatgaaatgaaagaatagcaaggttgtcccaataattgtctaaaaagggttgtaca 24616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 41776271 - 41776358
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||||||||  |||| | || ||||||||||||||||||||   ||||   |||| |||||||||||||||    
T  41776271 ctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 41776358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 23709072 - 23709129
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    |||||||||||| |||||||||||||  |||| |||| ||||||||||||||| ||||    
T  23709072 ctctctattgttcttgaccaatgaaaagagagcataacaaggttgtcccaaaaattgt 23709129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 25430742 - 25430829
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||||  |||||||||  | || ||||||||||||||||||||   |||||  |||| ||||||||| |||||    
T  25430742 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 25430829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 37471739 - 37471826
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||||||||  |||| | || ||| ||||||||||||||||   ||||   |||| |||||||||||||||    
T  37471739 ctctccattgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 37471826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 32234427 - 32234369
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtt 60  Q
    |||| ||||||| ||||||||||| |  ||||||||| |||||||||| ||||||||||    
T  32234427 ctctatattgttattgaccaatgagaagagagaataaaaaggttgtcctaaaagttgtt 32234369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 24503013 - 24503070
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||||||  |||||| ||| | ||||||  |||||||||    
T  24503013 ctctctattgtttttgaccaatgaaaagagagaaaaatgaagttgtcataaaagttgt 24503070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 27300442 - 27300499
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaat--aataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||  |||||||||||  || ||| ||||||||||||||||    
T  27300442 ctctctattgtttttgaccaat--aagaagagaatacaacaagattgtcccaaaagttgt 27300499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 35701818 - 35701761
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||  |||||||||  |||| ||| ||||||||||||||||    
T  35701818 ctctctattgtttttgaccaat--aagaagagaacataacaagattgtcccaaaagttgt 35701761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 42651016 - 42651073
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||| |||||||| |  |||||| || ||||||||| ||||||||||    
T  42651016 ctctctattgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaagttgt 42651073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 7900385 - 7900477
Alignment:
Q  2 ctctctattgtttttgaccaatgaa-agaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatat 93  Q
    ||||||||||||||| |||||| || || |||||| ||||| |||||  ||||||| ||   | || |||||||||||||| |||||||||||    
T  7900385 ctctctattgttttttaccaataaagaggagagaaaaataaagttgtttcaaaagtcgtcatagaatgattgtacaaatatgattactcatat 7900477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 20996178 - 20996214
Alignment:
Q  49 ccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  20996178 ccaaaagttgttcaaaaatgattgtacaaatatcatt 20996214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7295563 - 7295650
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||||||||||||| |  ||||||||| |||||||| ||||||||||| | ||||   ||||||||||||||||||||    
T  7295563 ctctctattgtttttgaccaatgagaagagagaataacaaggttgttccaaaagttgtctcaaaaaagttgtacaaatatcattactc 7295650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 44185272 - 44185353
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    |||||||||||||||||||||||| |  |||||| ||| |||||||| |||||||||| | |||||  |||| |||||||||    
T  44185272 ctctctattgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatca 44185353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 23034288 - 23034200
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    |||||||||||||||||||||| | | ||||| | || ||||||||||||||||||||   |||||  |||| ||||||||| ||||||    
T  23034288 ctctctattgtttttgaccaataagaaaagagcacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactca 23034200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 41910160 - 41910069
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatat 93  Q
    ||||||||||||||||||||||  |||||||||  | || |||||||||| |||||||||   ||||| ||||| ||||||||| |||||||||    
T  41910160 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcctaaaagttgtaccaaaagaattgttcaaatatcactactcatat 41910069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39533359 - 39533308
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaag 55  Q
    ||||||||||||||||||||||||| |||||||||| || |||||| ||||||    
T  39533359 tctctattgtttttgaccaatgaaa-aagagaataacaatgttgtctcaaaag 39533308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 22331186 - 22331099
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||| ||||||||||  |||| |||| ||||||||||||||| ||||   ||||  ||||| |||||| ||||||||    
T  22331186 ctctccattgttttttaccaatgaaaagagagcataacaaggttgtcccaaaaattgtagcaaaaaaattgttcaaataacattactc 22331099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 41538579 - 41538662
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattact 88  Q
    |||||||||||||||||||  ||||||| || |  | |||||||||||||||||||| | ||||| ||||| ||||||||| ||||    
T  41538579 tctattgtttttgaccaat--aagaagataacacaacaaggttgtcccaaaagttgtatcaaaagaattgttcaaatatcactact 41538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 47945079 - 47945166
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||| ||||||||||||  |||||||||| |  | |||||||||||||||||||| | |||||  |||| ||||||||| |||||    
T  47945079 ctctctattatttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 47945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 47950509 - 47950596
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||| ||||||||||||  |||||||||| |  | |||||||||||||||||||| | |||||  |||| ||||||||| |||||    
T  47950509 ctctctattatttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 47950596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 12141983 - 12142068
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    |||||||||||||||||||||||  | |||| || || |||||| |||||||||| | ||| || |||| ||||||||| |||||||    
T  12141983 tctattgtttttgaccaatgaaaagaaagaaaaaaaaagttgtcacaaaagttgtatcaaatgg-ttgttcaaatatcactactcat 12142068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 25887679 - 25887768
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    ||||| ||||||||||||||||||||   ||||| ||  | ||||| ||||||||||| ||||| || |||| ||||||||| ||||||||    
T  25887679 ctctccattgtttttgaccaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg-ttgttcaaatatcactactcata 25887768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 41227175 - 41227223
Alignment:
Q  6 ctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaa 54  Q
    |||||||||||||||||| | || |||||| |||||||||||| |||||    
T  41227175 ctattgtttttgaccaataagagtagagaaaaataaggttgtcacaaaa 41227223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 45335958 - 45336050
Alignment:
Q  2 ctctctattgtttt-tgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatat 93  Q
    |||||||||||||| |||||||| |||  |||||| || ||||||||||||||| ||||   |||||  | || ||||||||| |||||||||    
T  45335958 ctctctattgttttttgaccaataaaaagagagaacaacaaggttgtcccaaaatttgtaccaaaagagtagttcaaatatcactactcatat 45336050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 48814832 - 48814880
Alignment:
Q  42 ggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||||| ||||||||||| ||||| || ||| ||||||||||||||||    
T  48814832 ggttgtcacaaaagttgttaaaaaatgaatgttcaaatatcattactca 48814880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 48750 - 48837
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||||  |||||||||| |  | ||||||||||||||| |||| | ||||| ||||| |||||||||||||||    
T  48750 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagaattgttcaaatatcattactc 48837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 12612992 - 12612906
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattact 88  Q
    ||||| |||||||||||||||||| |  |||||| || ||||||||||||||||||||   |||| | |||| ||||||||||||||    
T  12612992 ctctccattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaatatcattact 12612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 35924371 - 35924453
Alignment:
Q  7 tattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||| |||||||| ||| |||  |||||| || ||||||||| ||||| |||||| |||||  ||||||||||||||||||||    
T  35924371 tattatttttgacaaataaaaagagagaacaacaaggttgtctcaaaaattgtttcaaaagagttgtacaaatatcattactc 35924453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 39032579 - 39032491
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||||||||||||||||||||  |||||||||| |  | ||||||||||||||| |||| | |||||  |||| ||||||||| ||||||    
T  39032579 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagagttgttcaaatatcactactca 39032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 39595370 - 39595457
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| ||||||||||||||||||||  |||||| ||  | |||||| |||||||||| | ||| || |||| ||||||||||||||||    
T  39595370 ctctccattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatgg-ttgttcaaatatcattactca 39595457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19127220 - 19127306
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| |||||||| ||||||||||| | ||||| ||  | |||||| |||||||||||||||| || |||| ||||||||| |||||    
T  19127220 ctctccattgttttggaccaatgaaaaatgagaaaaaagaagttgtcgcaaaagttgtttaaaatgg-ttgttcaaatatcactactc 19127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 28811524 - 28811583
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgttt 61  Q
    ||||| ||||||||||||||||||||  |||||| ||  |||||||| ||||||||||||    
T  28811524 ctctccattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgttt 28811583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 125188 - 125273
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattact 88  Q
    ||||||||||||||||||||||||||  |||||| ||  | |||||| |||||||||| | ||| || |||| ||||||||| ||||    
T  125188 ctctctattgtttttgaccaatgaaaagagagaaaaaagaagttgtcgcaaaagttgtatcaaatgg-ttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 5043021 - 5043075
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagt 56  Q
    |||||| ||||||||||||||||| |  |||||| || |||||||||||||||||    
T  5043021 ctctctgttgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagt 5043075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 10008536 - 10008586
Alignment:
Q  43 gttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcatat 93  Q
    |||||| ||||||||||||||||| |||||| | ||||||||| |||||||    
T  10008536 gttgtcacaaaagttgtttaaaaatgattgttcgaatatcatttctcatat 10008586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 10059663 - 10059749
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||| ||| || |||  || ||||||| | |||||||| ||   |||  |||||||||||||||||||||    
T  10059663 tctctattgtttttgaccaataaaataatagagaaagaaggttgccacaaaagttattatcaaataattgtacaaatatcattactc 10059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 5005209 - 5005266
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    |||||||||||||||||||||||| |  |||||| || || |||||| ||||||||||    
T  5005209 ctctctattgtttttgaccaatgataagagagaacaacaaagttgtctcaaaagttgt 5005266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 22653735 - 22653788
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaag 55  Q
    ||||||||| |||||||||||||| |  |||||| |||||| ||||||||||||    
T  22653735 ctctctattatttttgaccaatgagaagagagaacaataagattgtcccaaaag 22653788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 35595961 - 35595904
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| |||||||||||||||||||| ||||| | || ||| ||||||||||| ||||    
T  35595961 ctctccattgtttttgaccaatgaaaaaagagcacaacaagattgtcccaaaaattgt 35595904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 37821116 - 37821059
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||||||||  |||||||||  | || ||||||||||||||||||||    
T  37821116 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgt 37821059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 38919942 - 38919999
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||||||| |||||||||||||| |  |||||| || |||||||||| |||||||||    
T  38919942 ctctctattatttttgaccaatgagaagagagaacaacaaggttgtcctaaaagttgt 38919999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 23991328 - 23991416
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    |||| ||||||||||||||||||||  |||||| ||| ||||| ||  ||||||||||   ||| | |||| ||||||||||| |||||    
T  23991328 tctcaattgtttttgaccaatgaaaagagagaaaaatgaggttctcaaaaaagttgttagcaaatggttgttcaaatatcattcctcat 23991416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 35616776 - 35616724
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaa 54  Q
    |||||||||||||||||||||| | |  |||||| || |||||||||||||||    
T  35616776 ctctctattgtttttgaccaataagaagagagaacaacaaggttgtcccaaaa 35616724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 7304080 - 7303999
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    |||||||||||||||||||||||| |  |||||| ||| |||||||| |||||||||| | |||||  |||| |||||||||    
T  7304080 ctctctattgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatca 7303999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19713090 - 19713177
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtt-taaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||| ||||||||||  |||| | || ||||||||||||||||||||| |||||| | |||| |||||||||||||||    
T  19713090 ctctccattgttttttaccaatgaaaagagagcacaacaaggttgtcccaaaagttgttgtaaaaaag-ttgttcaaatatcattactc 19713177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 6997525 - 6997438
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| || |||||||||||||||||  |||| | || ||||||||||||||||||||   ||||  ||||| |||||||||||||||    
T  6997525 ctctccatcgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 6997438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 608636 - 608579
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| |||||||||||||||||| |  |||||| || ||||||||||||| ||||||    
T  608636 ctctccattgtttttgaccaatgagaagagagaacaacaaggttgtcccaacagttgt 608579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1897788 - 1897841
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgttt 61  Q
    ||||||||||||||||||||  |||||| ||  |||||||| ||||||||||||    
T  1897788 attgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgttt 1897841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 17442918 - 17442975
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgt 59  Q
    ||||||||||||||||| ||||  |||||||||| |  ||||||||||||||||||||||    
T  17442918 ctctctattgtttttgatcaat--aagaagagaacacaataaggttgtcccaaaagttgt 17442975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 25109178 - 25109219
Alignment:
Q  42 ggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  25109178 ggttgtctcaaaagttgtttaaaatgaattgtacaaatatca 25109219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 34792105 - 34792157
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagtt 57  Q
    ||||||||||||||||||| ||| ||||  | || ||||||||||||||||||    
T  34792105 tctattgtttttgaccaataaaaaaagaacacaacaaggttgtcccaaaagtt 34792157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 4114407 - 4114352
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagtt 57  Q
    |||| |||| || ||||||||||||| |||||||||||||||||||| ||||||||    
T  4114407 ctctttattattattgaccaatgaaaaaagagaataataaggttgtctcaaaagtt 4114352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 35518371 - 35518458
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||||||||||| | |  |||||| || || ||||||||||||||||| | ||||   |||| |||||||||||||||    
T  35518371 ctctctattgtttttgaccaataagaagagagaacaacaaagttgtcccaaaagttgtatcaaaatagttgttcaaatatcattactc 35518458  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 32755775 - 32755861
Alignment:
Q  3 tctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||| |||  |||||| ||||||| |||| ||||||||||   |||| | ||||| |||||||| |||||    
T  32755775 tctctattgtttttgaccaatcaaaagagagaaaaataaggctgtctcaaaagttgtcacaaaatggttgtagaaatatcactactc 32755861  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1151625 - 1151682
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    |||||||||||||||||||||||||| ||||||| || || |||||| |||| |||||    
T  1151625 ctctctattgtttttgaccaatgaaaaaagagaacaacaaagttgtctcaaaggttgt 1151682  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 694365 - 694453
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    ||||| |||||||||||||||||||| ||||||  ||| ||||||||  ||||||| ||   ||| |||||| ||||||||||| ||||    
T  694365 ctctccattgtttttgaccaatgaaaaaagagataaatgaggttgtcataaaagttattagcaaatgattgttcaaatatcattgctca 694453  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 30340089 - 30340177
Alignment:
Q  2 ctctctattgtttt-tgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||| |||||||||| |  |||||| || ||||||||||||||||||||   |||||  |||| ||||||||| |||||    
T  30340089 ctctctattgttttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 30340177  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 11828795 - 11828708
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||||||||  |||| | || |||||||||| |||||||||   ||||   |||| |||||||||||||||    
T  11828795 ctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcctaaaagttgtagcaaaaaagttgttcaaatatcattactc 11828708  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 22296104 - 22296017
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||| ||||| ||||||||||||||| ||||| | || ||||||||||||||| ||||  |||||   |||| ||||||| |||||||    
T  22296104 ctctatattgattttgaccaatgaaaaaagagcacaacaaggttgtcccaaaaattgtagaaaaaaagttgttcaaatattattactc 22296017  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 35705892 - 35705805
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||||||||  |||| | || ||| ||||||||||||||||   ||||   |||| |||||||||||||||    
T  35705892 ctctccattgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 35705805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 45202107 - 45202020
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||| ||||||||  |||| | || ||||||||||||||||||||   ||||   |||| |||||||||||||||    
T  45202107 ctctccattgtttttgatcaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 45202020  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 24491649 - 24491571
Alignment:
Q  5 tctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatca 83  Q
    |||||||||||| |||||| | |  |||||| |||||| ||||| |||||||||| | ||||| ||||| |||||||||    
T  24491649 tctattgtttttaaccaataagaagagagaacaataagattgtctcaaaagttgtatcaaaagaattgttcaaatatca 24491571  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 26273270 - 26273328
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagaga--ataataaggttgtcccaaaagttgtt 60  Q
    ||||||||||||||||||||||  |||||||||  | |||| |||||||||||||||||||    
T  26273270 ctctctattgtttttgaccaat--aagaagagaacacaatatggttgtcccaaaagttgtt 26273328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 35008070 - 35007989
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt-ttaaaaaggattgtacaaatatcattactc 89  Q
    ||||| ||||||||||||||  |||| | || ||||||||||||||||||||  |||||| | |||| |||||||||||||||    
T  35008070 attgtgtttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagtaaaaaag-ttgttcaaatatcattactc 35007989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 11229296 - 11229208
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcat 91  Q
    ||||| ||||||||||||||||||||   ||||| ||  | ||||| ||||||||||| ||||| || |||| ||||||||| |||||||    
T  11229296 ctctccattgtttttgaccaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg-ttgttcaaatatcactactcat 11229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 13881191 - 13881248
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||| | ||||| |||||| ||||||||||    
T  13881191 ctctccattgtttttgaccaatgaaaagagagcacaataaagttgtcacaaaagttgt 13881248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 14021316 - 14021373
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||| | ||||| |||||| ||||||||||    
T  14021316 ctctccattgtttttgaccaatgaaaagagagcacaataaagttgtcacaaaagttgt 14021373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 23141460 - 23141537
Alignment:
Q  12 tttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||| |  |||||| || ||||||||||||||||||||   |||||  |||| ||||||||| |||||    
T  23141460 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23141537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 23553250 - 23553327
Alignment:
Q  12 tttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    |||||||||||||| |  |||||| || ||||||||||||||||||||   |||||  |||| ||||||||| |||||    
T  23553250 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23553327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 28508528 - 28508479
Alignment:
Q  40 aaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||   |||| | ||||||||||||||||||||    
T  28508528 aaggttgtcccaaaagttgtcacaaaatggttgtacaaatatcattactc 28508479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 35203718 - 35203637
Alignment:
Q  8 attgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||||||  | || | || ||||||||||||||| ||||   ||||  ||||| |||||||||||||||    
T  35203718 attgtttttgaccaatgaaaagatagcacaacaaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactc 35203637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 36643758 - 36643806
Alignment:
Q  37 aataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatta 86  Q
    |||||| |||||||||||||||| ||||| || |||||||||||||||||    
T  36643758 aataagattgtcccaaaagttgtataaaatgg-ttgtacaaatatcatta 36643806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 3366127 - 3366182
Alignment:
Q  2 ctctctattgtttttgaccaatga-aagaagagaataataaggttgtcccaaaagtt 57  Q
    ||||| |||||| ||||||||||| ||||| ||||||||||||||||| ||||||||    
T  3366127 ctctccattgttattgaccaatgagaagaa-agaataataaggttgtcacaaaagtt 3366182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3839505 - 3839561
Alignment:
Q  1 cctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagtt 57  Q
    |||||||||| |||||||||||| ||| ||||||| |||||  ||||| ||||||||    
T  3839505 cctctctattatttttgaccaataaaaaaagagaacaataaaattgtcacaaaagtt 3839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 11175180 - 11175132
Alignment:
Q  44 ttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    |||| |||||||||||||||||| ||||||| |||||||| | ||||||    
T  11175180 ttgttccaaaagttgtttaaaaatgattgtagaaatatcaattctcata 11175132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 26387806 - 26387718
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactca 90  Q
    |||| ||||| ||||||||||| | | ||||  | || |||||||||||||||||||| | |||||  |||| ||||||||| ||||||    
T  26387806 ctctatattgattttgaccaataagaaaagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactca 26387718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 36763488 - 36763412
Alignment:
Q  9 ttgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcatt 85  Q
    |||||||||||||||||||  |||||| || |||||||||  |||| ||||| | ||| | |||| |||||||||||    
T  36763488 ttgtttttgaccaatgaaaagagagaaaaagaaggttgtcataaaaattgttaacaaatggttgttcaaatatcatt 36763412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 38533166 - 38533086
Alignment:
Q  9 ttgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactc 89  Q
    ||||||||||||||||| |  |||||| || ||||||||||||||| ||||   ||||| ||| | ||||||||| |||||    
T  38533166 ttgtttttgaccaatgacaatagagaacaacaaggttgtcccaaaaattgtaccaaaagaattattcaaatatcactactc 38533086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 39744569 - 39744480
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgttta-aaaaggattgtacaaatatcattactcata 92  Q
    |||||||||| ||||||||||| |||  |||||| || || ||||||   ||||||||||| ||||||  ||||||||||||| ||||||||    
T  39744569 ctctctattgattttgaccaatcaaaatagagaaaaacaaagttgtcatgaaagttgtttagaaaagg--tgtacaaatatcactactcata 39744480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 145143 - 145233
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaata--ataaggttgtcccaaaagttgtttaaaaaggattgtacaaatatcattactcata 92  Q
    ||||||||||||||||||||||  |||||||||| |  | ||||||||||||||||||||   |||||  |||| ||||||||| ||||||||    
T  145143 ctctctattgtttttgaccaat--aagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactcata 145233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 3039 - 3096
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgt 59  Q
    ||||| ||||||||||||||||||||  |||| | ||||| |||||||||||||||||    
T  3039 ctctccattgtttttgaccaatgaaaagagagcacaataaagttgtcccaaaagttgt 3096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 11288 - 11347
Alignment:
Q  2 ctctctattgtttttgaccaatgaaagaagagaataataaggttgtcccaaaagttgttt 61  Q
    ||||| ||||||||||||||||||||  |||||| ||  |||||||| ||||||||||||    
T  11288 ctctccattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgttt 11347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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