View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1175_high_5 (Length: 310)
Name: NF1175_high_5
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_high_5 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
| [»] scaffold0155 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 57 - 295
Target Start/End: Complemental strand, 3395814 - 3395576
Alignment:
| Q |
57 |
gtgatataataaatgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaa |
156 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
3395814 |
gtgatatatcaagtgtcagttaaatatcaacattggataaaatattggaggttgaagaacaaataagtaaaaaataaat-catatacttaagtcttaaaa |
3395716 |
T |
|
| Q |
157 |
ttttggatgaagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccataagtctcaatggtga |
255 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||||||||||| ||| | ||||||||||||| ||||| | |||||||||| ||||||||| |
|
|
| T |
3395715 |
ttttggatgaaaatgtaacatcattttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtctccccataagttccaatggtga |
3395616 |
T |
|
| Q |
256 |
tatcatatccgcttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3395615 |
tatcatatccgcttcaacatttttggggagcataagtggt |
3395576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 5789223 - 5788995
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| | | || | ||||| ||| || ||||||||||||| |
|
|
| T |
5789223 |
tgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagttttggatgaaga |
5789124 |
T |
|
| Q |
170 |
tgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcg--attcacacaaatgttggccccccataagtctcaatggtgatatcatatccg |
266 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||| | || |||||||||| ||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
5789123 |
tgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgatatcatacccg |
5789024 |
T |
|
| Q |
267 |
cttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
5789023 |
cttcaacatttttgggaagcggaagtggt |
5788995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 269
Target Start/End: Complemental strand, 41754717 - 41754523
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| |||||||| |||| |||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
41754717 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcatatacttaagactttaaattttggatgaagatgtaac |
41754619 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgctt |
269 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||| | ||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
41754618 |
atcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgctt |
41754523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 34722975 - 34723095
Alignment:
| Q |
88 |
attggataaaattatggaggtttaagaacaaataagttaaa---aataaattcatatacttaagccttaaaattttggatgaagatgt-aaatcattatc |
183 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||| ||| || ||| ||||||||||||| |||| ||||||| |||| ||||| |||||| || |
|
|
| T |
34722975 |
attggataaaatagtggaggtttgacaacaaataagtgaaagaaaaaaaactcatatacttaagtcttacaattttgaatgatgatgtggtatcattttc |
34723074 |
T |
|
| Q |
184 |
acttgtgtgattgctctttct |
204 |
Q |
| |
|
|||||| || ||| ||||||| |
|
|
| T |
34723075 |
acttgtatggttgttctttct |
34723095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 45658290 - 45658323
Alignment:
| Q |
140 |
atacttaagccttaaaattttggatgaagatgta |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
45658290 |
atacttaagccttaaaattttggatgaaaatgta |
45658323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2593242 - 2593198
Alignment:
| Q |
126 |
aaaaataaattcatatacttaagccttaaaattttggatgaagat |
170 |
Q |
| |
|
||||| ||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
2593242 |
aaaaaaaaactcatatatttaagtcttaaaattttggatgaagat |
2593198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 295
Target Start/End: Original strand, 13228430 - 13228655
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
||||| |||||| |||||||||||||| || |||||||| |||||||||||||| |||||||||| ||||| |||||| |||||||||||| ||||| | |
|
|
| T |
13228430 |
tgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaat-catatccttaagtcttaaaattttgaatgaaaa |
13228528 |
T |
|
| Q |
170 |
tgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccataagtctcaatggtgatatcatatccgct |
268 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||| | ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
13228529 |
tgtaacatcattttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggctccccataagtttcaatggtgatatcatatccgct |
13228628 |
T |
|
| Q |
269 |
tcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
13228629 |
tcaacatttttggggagcataagtggt |
13228655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 271
Target Start/End: Original strand, 50814539 - 50814733
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| |||||||| |||| |||| || ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
50814539 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaa--cacatacttaagactttaaattttggatgaagatgtaac |
50814635 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||| | ||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
50814636 |
atcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttca |
50814733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 70 - 293
Target Start/End: Complemental strand, 49953380 - 49953150
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaa-----aataaattcatatacttaagccttaaaattttggat |
164 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||||| |||||||||||||| ||| || ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
49953380 |
tgtcatttaaatctcatcattggataaaatattagaggtcgaagaacaaataagtgaaagaaaaaaaaaactcatatactaaagccttaaaattttggat |
49953281 |
T |
|
| Q |
165 |
gaagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcata |
262 |
Q |
| |
|
||||| | | |||||| ||||||||||| ||| | ||||| |||| | |||| |||||||| ||||| | ||||| |||||| ||| |||||||||||| |
|
|
| T |
49953280 |
gaagacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcata |
49953181 |
T |
|
| Q |
263 |
tccgcttcaacatttttggggagcggaagtg |
293 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
49953180 |
tacgcttcaacatttttggggagcggaagtg |
49953150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 87 - 293
Target Start/End: Original strand, 39974598 - 39974805
Alignment:
| Q |
87 |
cattggataaaattatggaggtttaagaacaaataagtt-aaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa-atcattatca |
184 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||| || |||||||||||||||||| ||||||| | |||||| ||| |
|
|
| T |
39974598 |
cattggataaaatattggaggtcgaagaacaaataagtggaaaaaaaaactcata--ctaaagccttaaaattttggaagaagatgcgacatcattctca |
39974695 |
T |
|
| Q |
185 |
cttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttcaacatttttgggg |
283 |
Q |
| |
|
| |||||| ||| | ||||| |||| | |||| |||||||| ||||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39974696 |
cctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacatttttgggg |
39974795 |
T |
|
| Q |
284 |
agcggaagtg |
293 |
Q |
| |
|
|| ||||||| |
|
|
| T |
39974796 |
agtggaagtg |
39974805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 303
Target Start/End: Original strand, 281673 - 281891
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
281673 |
tgtcatttaaatctcatcattggataaaatactggaggtcgaagaacaaataagtgaaaaa-aaactcatatactaaagccttaaaattttggatgaaga |
281771 |
T |
|
| Q |
170 |
tg-taaatcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgc |
267 |
Q |
| |
|
|| | |||||| ||||||||||| ||| | ||||| |||| ||||| | ||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
281772 |
tgcgacatcattctcacttgtgtggttgttttttctgcaat----------------gtgttgtctcccccgtaagtcccaatggtgatatcatatacgc |
281855 |
T |
|
| Q |
268 |
ttcaacatttttggggagcggaagtggtctgtggtg |
303 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
281856 |
ttcaacatttttgtggagcggaagtgctgtgtggtg |
281891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 11559315 - 11559381
Alignment:
| Q |
139 |
tatacttaagccttaaaattttggatgaagatg-taaatcattatcacttgtgtgattgctctttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||| ||||||||||| ||||||||||| |
|
|
| T |
11559315 |
tatacttaagccttaaaattttggatgaagatgttgtagcattttcacttgtgtggttgctctttct |
11559381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 50157995 - 50158029
Alignment:
| Q |
137 |
catatacttaagccttaaaattttggatgaagatg |
171 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
50157995 |
catatacttaaggcttaaaattttggatgaagatg |
50158029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 24183702 - 24183669
Alignment:
| Q |
140 |
atacttaagccttaaaattttggatgaagatgta |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
24183702 |
atacttaagccttaaaattttggatgaaaatgta |
24183669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 76 - 303
Target Start/End: Complemental strand, 23142140 - 23141911
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| |||||||| |||| ||| ||| ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
23142140 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaaactcaaatacttaagactttaaattttggatgaagatgtaac |
23142041 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttcaac |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23142040 |
atcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttcaac |
23141941 |
T |
|
| Q |
274 |
atttttggggagcggaagtggtctgtggtg |
303 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |
|
|
| T |
23141940 |
attttcggggagcggaagtggtccgtggtg |
23141911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 303
Target Start/End: Complemental strand, 42797628 - 42797401
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
|||||||| || |||||||||||| |||||||| ||| |||||||| |||| |||| || |||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
42797628 |
ttaaatcttaatattggataaaatattggaggttggagagtaaataagtgaaaa-taaactcttatacttaagactttaaattttggatgaagatgtgac |
42797530 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccataagtctcaatggtgatatcatatccgcttcaaca |
274 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | ||||||||||||| |||| || || | ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42797529 |
atcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgctcctcgtaagtctcaatggtgatatcatatctgcttcaaca |
42797430 |
T |
|
| Q |
275 |
tttttggggagcggaagtggtctgtggtg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42797429 |
tttttggggagcggaagtggtctgtggtg |
42797401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 76 - 303
Target Start/End: Original strand, 13756286 - 13756507
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| |||||||| |||| |||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
13756286 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcatatacttta-------aattttggatgaagatgtaac |
13756377 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccc-cataagtctcaatggtgatatcatatccgcttcaac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||| || |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
13756378 |
atcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttcaac |
13756477 |
T |
|
| Q |
274 |
atttttggggagcggaagtggtctgtggtg |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
13756478 |
atttttggggagcggaagtggtccgtggtg |
13756507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 10901669 - 10901547
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| |||| | ||||||||||| ||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
10901669 |
ttaaatctcaacattggataaaatattggaggttgaagaacatataaatgaaaaataaatt-atatatttaagtctt--aattttggatgaagatgtaac |
10901573 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctct |
200 |
Q |
| |
|
|||||| ||||||||| ||||||||| |
|
|
| T |
10901572 |
atcattttcacttgtgcgattgctct |
10901547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 293
Target Start/End: Complemental strand, 21589166 - 21588960
Alignment:
| Q |
87 |
cattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa-atcattatcac |
185 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||| ||| ||||| || |||||||||||||||| | ||||||| | |||||| |||| |
|
|
| T |
21589166 |
cattggataaaatattggaggtcgaagaacaaataagtggaaaaaaaactcata--ctaaagccttaaaattttgaaagaagatgcgacatcattctcac |
21589069 |
T |
|
| Q |
186 |
ttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttcaacatttttgggga |
284 |
Q |
| |
|
|||||| ||| | ||||| |||| | |||| |||||||| ||||| | ||||| ||||| ||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
21589068 |
ctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacaattatgggga |
21588969 |
T |
|
| Q |
285 |
gcggaagtg |
293 |
Q |
| |
|
||| ||||| |
|
|
| T |
21588968 |
gcgaaagtg |
21588960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 45527083 - 45527186
Alignment:
| Q |
115 |
acaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatat |
213 |
Q |
| |
|
|||||||||| |||||| || |||||||||||| ||||||||||| |||| |||| |||||| | ||||||||| ||||||||||| |||| ||| |
|
|
| T |
45527083 |
acaaataagtgaaaaat---tttatatacttaagctttaaaattttgattgaatatgtcgtatcattcttacttgtgtggttgctctttctccaatgtat |
45527179 |
T |
|
| Q |
214 |
cgattca |
220 |
Q |
| |
|
||||||| |
|
|
| T |
45527180 |
cgattca |
45527186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 14714339 - 14714374
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaagatg |
171 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14714339 |
tcatatacttaaggcttaaaattttggatgaagatg |
14714374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 24481755 - 24481865
Alignment:
| Q |
142 |
acttaagccttaaaattttggatgaagatgta-aatcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccat |
240 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||| ||||| ||||||||| ||||| | ||| | | ||| |||| | ||||||| |||||| |
|
|
| T |
24481755 |
acttaagccttaaaattttgaaagaagatgtagtatcattctcactggtgtgattgttctttttccaacgtgttgatctacaccagtgttggcaccccat |
24481854 |
T |
|
| Q |
241 |
aagtctcaatg |
251 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24481855 |
aagactcaatg |
24481865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 43387447 - 43387222
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||| ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
43387447 |
tgtcaattaaatttcaacgttggataaaatattggaggttgaagaacatataagtgaaaaataaat-catatacttaagtcttaaaattttggatgaaga |
43387349 |
T |
|
| Q |
170 |
tgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccataagtctcaatggtgatatcatatccgct |
268 |
Q |
| |
|
||||| || ||| ||||||||||||||||| ||||| || | | || |||||||||| |||||| ||||||||||| |||||||||||||||||||| | |
|
|
| T |
43387348 |
tgtaacattattttcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggatccccataagtcccaatggtgatatcatatccgtt |
43387249 |
T |
|
| Q |
269 |
tcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
||||||||||| |||||| ||||||| |
|
|
| T |
43387248 |
tcaacattttttgggagcaaaagtggt |
43387222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 6315214 - 6315260
Alignment:
| Q |
6 |
aagaaaaagcagcaaaatacttagaatttggagattaacacgaggca |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315214 |
aagaaaaagcagcaaaatacttagaatttggagattaacacgaggca |
6315260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 31420732 - 31420794
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaagatgtaaatcattatcacttgtgtgattgct |
198 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
31420732 |
tcatatacttgagtcttaaagttttggatgaagatgtatatcattgtcacttgtgtggttgct |
31420794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 22636580 - 22636544
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaagatgt |
172 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
22636580 |
tcatatacttaatccttaaaattttggataaagatgt |
22636544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 33596 - 33368
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| | | || | ||||| ||| || ||||||||||||| |
|
|
| T |
33596 |
tgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagttttggatgaaga |
33497 |
T |
|
| Q |
170 |
tgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcg--attcacacaaatgttggccccccataagtctcaatggtgatatcatatccg |
266 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||| | || |||||||||| ||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
33496 |
tgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgatatcatacccg |
33397 |
T |
|
| Q |
267 |
cttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
33396 |
cttcaacatttttgggaagcggaagtggt |
33368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 282
Target Start/End: Complemental strand, 50332270 - 50332063
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| |||| |||||||| |||| |||| |||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
50332270 |
ttaaatctcaatattggataaaatattagaggttgaagagtaaataagtgaaaa-taaactcatatacttaatactttaaattttggatgaagatgtaac |
50332172 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttcaac |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | |||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
50332171 |
atcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttcaac |
50332072 |
T |
|
| Q |
274 |
atttttggg |
282 |
Q |
| |
|
||||||||| |
|
|
| T |
50332071 |
atttttggg |
50332063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 303
Target Start/End: Complemental strand, 12746302 - 12746110
Alignment:
| Q |
111 |
aagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa-atcattatcacttgtgtgattgctctttcttcaat |
209 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||| | ||| |||| |
|
|
| T |
12746302 |
aagaacaaataagtgaaaaa-aaactcatataccaaaaccttaaaattttggatgaagatgcgacatcattctcacttgtgtgattgct-tctctgcaat |
12746205 |
T |
|
| Q |
210 |
atatcgattcacacaaatgttggcccccca-taagtctcaatggtgatatcatatccgcttcaacatttttggggagcggaagtggtctgtggtg |
303 |
Q |
| |
|
|||||| |||||||| ||||| | |||| ||| || ||||||||||||||||| ||||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
12746204 |
gtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaacatttttggagagcggaaatgctttgtggtg |
12746110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 36095916 - 36096071
Alignment:
| Q |
140 |
atacttaagccttaaaattttggatgaagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc-cccc |
237 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| | |||||| |||| | |||| ||| | ||||| |||| | |||| |||||||| ||||| |||| |
|
|
| T |
36095916 |
atactaaagccttaaaattttggaagaagatgcgacatcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccc |
36096015 |
T |
|
| Q |
238 |
cataagtctcaatggtgatatcatatccgcttcaacatttttggggagcggaagtg |
293 |
Q |
| |
|
| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36096016 |
cgtatgtcccaatggtgatatcatatacgcttcaacatttttggggagcggaagtg |
36096071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 6088135 - 6088044
Alignment:
| Q |
132 |
aaattcatatacttaagccttaaaattttggatgaagatgt-aaatcattatcacttgtgtgattgctctttcttcaatatatcgattcaca |
222 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||| | || ||| ||||||| ||| |||||||||| |||| | ||||| |||| |
|
|
| T |
6088135 |
aaatttatatacttaaaccttaaaattttggatgaagatgtgatataattctcacttgaatgagtgctctttctccaatgtgtcgatccaca |
6088044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 3973739 - 3973654
Alignment:
| Q |
137 |
catatacttaagccttaaaattttggatgaagatgt-aaatcattatcacttgtgtgattgctctttcttcaatatatcgattcac |
221 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||| |||| | |||||| ||||||||| |||||| |||| ||| ||||||| |
|
|
| T |
3973739 |
catatatttaatccttcaaattttggatgaagatgtggtatcactctcacttttgtgattgccctttctccaatgtattgattcac |
3973654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 3996138 - 3996223
Alignment:
| Q |
137 |
catatacttaagccttaaaattttggatgaagatgt-aaatcattatcacttgtgtgattgctctttcttcaatatatcgattcac |
221 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||| |||| | |||||| ||||||||| |||||| |||| ||| ||||||| |
|
|
| T |
3996138 |
catatatttaatccttcaaattttggatgaagatgtggtatcactctcacttttgtgattgccctttctccaatgtattgattcac |
3996223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 9261273 - 9261306
Alignment:
| Q |
140 |
atacttaagccttaaaattttggatgaagatgta |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
9261273 |
atacttaagccttaaaattttggatgaaaatgta |
9261306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 14332 - 14489
Alignment:
| Q |
140 |
atacttaagccttaaaattttggatgaagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggcccc-c |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || | | |||||||||||||||| ||||||||||| | | ||||||||||| ||||||| || | |
|
|
| T |
14332 |
atacttaaaccttaaaattttggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctc |
14431 |
T |
|
| Q |
238 |
cataagtctcaatggtgatatcatatccgcttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
14432 |
cataagtcttaatggtgatatcatatccgcttcaacatttttgaggagcggatgtggt |
14489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 38016185 - 38016055
Alignment:
| Q |
166 |
aagatgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggccccccataagtctcaatggtgatatcatatc |
264 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
38016185 |
aagatgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctccccataagtcccaatggcgatatcatatc |
38016086 |
T |
|
| Q |
265 |
cgcttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |
|
|
| T |
38016085 |
cgcttcaacatttttgtggaacggaagtggt |
38016055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 293
Target Start/End: Complemental strand, 33014224 - 33014000
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaaga |
169 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||||| |||||||||||| | ||||| ||| ||||||||| ||| ||||||||||| |||||| | |
|
|
| T |
33014224 |
tgtcacttaaatctcatcattggataaaatattggaggtcgaagaacaaataaatgaaaaa-aaactcatatactaaagtcttaaaattttagatgaaaa |
33014126 |
T |
|
| Q |
170 |
tgtaa-atcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggcccccca-taagtctcaatggtgatatcatatccgc |
267 |
Q |
| |
|
|| | |||||| ||||||||||| ||| | ||||| |||| | |||| |||||||| ||||| | ||| |||||| ||||||||||||||||| ||| |
|
|
| T |
33014125 |
tgcgacatcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatatacgc |
33014026 |
T |
|
| Q |
268 |
ttcaacatttttggggagcggaagtg |
293 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33014025 |
ttcaacatttttggggagcggaagtg |
33014000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 42312338 - 42312245
Alignment:
| Q |
135 |
ttcatatacttaagccttaaaattttggatgaagatg-taaatcattatcact--tgtgtgattgctctttcttcaatatatcgattcacacaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
42312338 |
ttcatatacttaagccttaaaattttggatgaagatgcgacatcattctcacttgtgtgtgattgctctttctataatgtgtcgattcaaacaa |
42312245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 38016239 - 38016182
Alignment:
| Q |
57 |
gtgatataataaatgtcaattaaatctcaacattggataaaattatggaggtttaaga |
114 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
38016239 |
gtgatgtaataaatgtcaattaaatcttaacattggataaaatattagaggtttaaga |
38016182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2261159 - 2261124
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaagatg |
171 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2261159 |
tcatatacttaaggcttaaaattttggatgaagatg |
2261124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 42313437 - 42313472
Alignment:
| Q |
137 |
catatacttaagccttaaaattttggatgaagatgt |
172 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42313437 |
catatacttaagccttaaaaatttggatgaagatgt |
42313472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 15721560 - 15721438
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| || | |||||||| |||| |||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15721560 |
ttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaa-taaactcatatacttaagactttaaattttggatgaagatgtaac |
15721462 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgct |
198 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
15721461 |
atcattatcactcgtgtgattgct |
15721438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 1594562 - 1594684
Alignment:
| Q |
76 |
ttaaatctcaacattggataaaattatggaggtttaagaacaaataagttaaaaataaattcatatacttaagccttaaaattttggatgaagatgtaa- |
174 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| || | |||||||| |||| |||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
1594562 |
ttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaa-taaactcatatacttaagactttaaattttggatgaagatgtaac |
1594660 |
T |
|
| Q |
175 |
atcattatcacttgtgtgattgct |
198 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
1594661 |
atcattatcactcgtgtgattgct |
1594684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 1599542 - 1599653
Alignment:
| Q |
193 |
attgctctttcttcaatatatcgattcacacaaatgttggc-cccccataagtctcaatggtgatatcatatccgcttcaacatttttggggagcggaag |
291 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||| | ||||| |||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1599542 |
attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaag |
1599641 |
T |
|
| Q |
292 |
tggtctgtggtg |
303 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
1599642 |
tggtatgtggtg |
1599653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 26894729 - 26894866
Alignment:
| Q |
159 |
ttggatgaagatgtaaatcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggcc-ccccataagtctcaatggtgata |
257 |
Q |
| |
|
||||||||||||| || ||| ||| |||||||||| |||||||| |||| | | |||||||||| ||||||| ||||||||||| |||| ||||| |
|
|
| T |
26894729 |
ttggatgaagatgaaacatattctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgata |
26894828 |
T |
|
| Q |
258 |
tcatatccgcttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
| |||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
26894829 |
taatatccacttcaacattttaggggagtggaagtggt |
26894866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 24174784 - 24174856
Alignment:
| Q |
138 |
atatacttaagccttaaaattttggatgaagatgtaaat-cattatcacttgtgtgattgctctttcttcaat |
209 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| | | |||| | |||||| ||| |||||||||| |||| |
|
|
| T |
24174784 |
atatacttaagtcttaaaatgttggatgaagatgtgattccattcttacttgtatgactgctctttctccaat |
24174856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 22917 - 22752
Alignment:
| Q |
70 |
tgtcaattaaatctcaacattggataaaattatggaggtttaagaacaaataagtt-aaaaataaattcatatacttaagccttaaaattttggatgaag |
168 |
Q |
| |
|
|||||||||||| | || ||||||||||| ||||| || || | || |||||| ||||| ||| ||||||||||| | |||| ||||||||||||| |
|
|
| T |
22917 |
tgtcaattaaatttaaatattggataaaagagtggagattgaacatcacataagtggaaaaaaaaactcatatacttacactttaacattttggatgaag |
22818 |
T |
|
| Q |
169 |
atgtaaa-tcattatcacttgtgtgattgctctttcttcaatatatcgattcacacaaatgttggc |
233 |
Q |
| |
|
| |||| || || |||||||| ||||| |||||||| |||| ||||||||||||| | ||||||| |
|
|
| T |
22817 |
acataaaatctttctcacttgtttgattactctttctccaatgtatcgattcacaccactgttggc |
22752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 50422 - 50342
Alignment:
| Q |
215 |
gattcacacaaatgttggccccccataagtctcaatggtgatatcatatccgcttcaacatttttggggagcggaagtggt |
295 |
Q |
| |
|
||||||||||| ||||||| | | | ||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
50422 |
gattcacacaagtgttggctctcgaaaagtcctaataatgatatcatatccgcttcaacgttttttgggagcagaagtggt |
50342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 96968 - 96933
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaagatg |
171 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
96968 |
tcatatacttaaggcttaaaattttggatgaagatg |
96933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 126286 - 126335
Alignment:
| Q |
119 |
ataagttaaaaataaattcatatacttaagccttaaaattttggatgaag |
168 |
Q |
| |
|
|||||| ||||| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
126286 |
ataagtaaaaaaataactcatatacttaaggcttaaaattttggatgaag |
126335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 573 - 541
Alignment:
| Q |
136 |
tcatatacttaagccttaaaattttggatgaag |
168 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
573 |
tcatatacttaagtcttaaaattttggatgaag |
541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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