View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1175_high_7 (Length: 302)
Name: NF1175_high_7
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 20691359 - 20691625
Alignment:
| Q |
29 |
aatcatatgtgt-ggtgtcagacacacgtt---cccgaggagtatttgtgcttcgtaggtgtctaattggttgcttagtatgtaaagtatttacaattac |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20691359 |
aatcatatgtgtcggtgtcagacacacgccaaacccgaggagtatttgtgcttcgtaggtgtctaattggttgcttagtatgtaaagtatttacaattac |
20691458 |
T |
|
| Q |
125 |
aatgagctgatgatagcaatggaaaaacacccttttggttttggcatacacaaaaaattcatacagatcataaaccacaataaaacccataaatccaatg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20691459 |
aatgagctgatgatagcaatggaaaaacacccttttggttttggcatacacaaaaaattcatacaaatcataaaccacaataaaacccataaatccaatg |
20691558 |
T |
|
| Q |
225 |
aacacgaacatattaaagggtgtagaaaagatgaaaaacaacttacttatgccatcaatttgttcat |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20691559 |
aacacgaacatattaaagggtatagaaaagatgaaaaacaacttacttatgccatcaatttgttcat |
20691625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University