View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_10 (Length: 433)
Name: NF1175_low_10
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 53089481 - 53089063
Alignment:
| Q |
23 |
cttcaggaagaactcgaacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtga |
122 |
Q |
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| T |
53089481 |
cttcaggaagaactcgaacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtga |
53089382 |
T |
|
| Q |
123 |
agtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaa |
222 |
Q |
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| T |
53089381 |
agtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaa |
53089282 |
T |
|
| Q |
223 |
tccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccactt |
322 |
Q |
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| T |
53089281 |
tccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccactt |
53089182 |
T |
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| Q |
323 |
atcggaggtattttttcaaggaaaaagggaactagccaagaagttccatg-----------------atgaattttagcgagtataagtatgctatatgc |
405 |
Q |
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| T |
53089181 |
ataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgagtgacgagtttgtatgaattttagcgagtataagtatgctatatgc |
53089082 |
T |
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| Q |
406 |
attacattaccagaataat |
424 |
Q |
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| T |
53089081 |
atcacattaccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 94 - 378
Target Start/End: Complemental strand, 14334119 - 14333826
Alignment:
| Q |
94 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
193 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14334119 |
agtgaaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaattt |
14334020 |
T |
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| Q |
194 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctca---------aggtgttgagaagttggaaaggcaccctt |
284 |
Q |
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| T |
14334019 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcaccctt |
14333920 |
T |
|
| Q |
285 |
ctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgaat |
378 |
Q |
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| T |
14333919 |
ctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
373 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
424 |
Q |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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