View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1175_low_11 (Length: 421)

Name: NF1175_low_11
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1175_low_11
NF1175_low_11
[»] chr3 (3 HSPs)
chr3 (1-410)||(44699101-44699510)
chr3 (208-410)||(37987975-37988172)
chr3 (342-386)||(21726959-21727003)
[»] chr7 (1 HSPs)
chr7 (208-410)||(36379776-36379972)
[»] scaffold0418 (1 HSPs)
scaffold0418 (210-410)||(6643-6837)
[»] chr4 (4 HSPs)
chr4 (210-410)||(40495196-40495390)
chr4 (342-386)||(2182338-2182382)
chr4 (1-41)||(3794027-3794067)
chr4 (342-386)||(38935603-38935647)
[»] chr1 (1 HSPs)
chr1 (205-410)||(49452109-49452308)
[»] chr8 (2 HSPs)
chr8 (342-386)||(32413954-32413998)
chr8 (342-386)||(39860690-39860734)
[»] chr2 (2 HSPs)
chr2 (342-386)||(15902312-15902356)
chr2 (1-41)||(6661174-6661214)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 44699101 - 44699510
Alignment:
Q  1 tacaagaaatcatgcaattagttagggaattatgccaggagtactcccgggaaagttaccaggagtaacccctcccctcgcagaagtcctgtcaaattgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44699101 tacaagaaatcatgcaattagttagggaattatgccaggagtactcctgggaaagttaccgggagtaacccctcccctcgcagaagtcctgtcaaattgc 44699200  T
Q  101 atggcagaaaataaaattcaaaaacgaatatgaccggtcttactaagtcaggaaagctgctgcttttgcataccggtgcaacactttgctgggggttgat 200  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44699201 atggcagaaaatgaaattcaaaaacgaatacgaccggtcttactaagtcaggaaagctgctgcttttgcataccggtgcaacactttgctgggggttgat 44699300  T
Q  201 ttagtttactaagctgctcttttctcactttattttcagctcaatcgttttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatcc 300  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44699301 ttagtttactaagctgctcttttctcacttgatttccagctcaatcgttttaattcttccaagattgaacgtgtgtattctccaccaatctcaagtatcc 44699400  T
Q  301 aatcataacataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctaca 400  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44699401 gatcataacataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttcccatttaccaaaaccataacattagtttctaca 44699500  T
Q  401 tccaattcat 410  Q
    ||||||||||    
T  44699501 tccaattcat 44699510  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 208 - 410
Target Start/End: Complemental strand, 37988172 - 37987975
Alignment:
Q  208 actaagctgctcttttctcactttattttca-gctcaatcgt-tttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatccaatca 305  Q
    |||||||||||| |||||||||| |||  || |||| ||||| |||| |||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  37988172 actaagctgctcctttctcacttgattcccaagctctatcgtctttacttctgccaagattgaaagtgtgtattctccaccgatctcatgtattcaatca 37988073  T
Q  306 taacataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctacatccaa 405  Q
     | ||||||||||||||||       |||   |||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||    
T  37988072 cagcataattcttgatttt-------atacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattagtttctacatccaa 37987980  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 21726959 - 21727003
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  21726959 tggcagcaattcaatttaatggtttttcatttaccaaaagcataa 21727003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 410
Target Start/End: Original strand, 36379776 - 36379972
Alignment:
Q  208 actaagctgctcttttctcactttattttcagctcaatcgt-tttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatccaatcat 306  Q
    |||||||||||| |||||||||| |||  |||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||     
T  36379776 actaagctgctcctttctcacttgattcccagctctatcgtctttaattctgccaagattgaaagtgtgtattctccaccgatctcatgtattcaatcac 36379875  T
Q  307 aacataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctacatccaat 406  Q
    ||||||||||||||||||       |||   |||||| ||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  36379876 aacataattcttgatttt-------atacaagggttgacagcaattcaatttaaaggtttcccatttaccaaagccataaaattagtttctacatccaat 36379968  T

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Target: scaffold0418 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 6837 - 6643
Alignment:
Q  210 taagctgctcttttctcactttattttcagctcaatcgt-tttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatccaatcataa 308  Q
    |||||||||| |||||||||| |||  ||||||  |||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||| ||    
T  6837 taagctgctcctttctcacttgattcccagctctttcgtctttaattctgccaagattgaaagtgtgtattctccaccgatctcatgtattcaatcacaa 6738  T
Q  309 cataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctacatccaattc 408  Q
    ||||||||||||||||       |||   |||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||    
T  6737 cataattcttgatttt-------atacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattagtttctacatccaattc 6645  T

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Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 210 - 410
Target Start/End: Original strand, 40495196 - 40495390
Alignment:
Q  210 taagctgctcttttctcactttattttcagctcaatcgt-tttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatccaatcataa 308  Q
    |||||||||| |||||||||| |||  ||||||  |||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||| ||    
T  40495196 taagctgctcctttctcacttgattcccagctctttcgtctttaattctgccaagattgaaagtgtgtattctccaccgatctcatgtattcaatcacaa 40495295  T
Q  309 cataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctacatccaattc 408  Q
    ||||||||||||||||       |||   |||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||    
T  40495296 cataattcttgatttt-------atacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattagtttctacatccaattc 40495388  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 2182382 - 2182338
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  2182382 tggcagcaattcaatttaatggtttttcatttaccaaaagcataa 2182338  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3794027 - 3794067
Alignment:
Q  1 tacaagaaatcatgcaattagttagggaattatgccaggag 41  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  3794027 tacaagaaatcctgcaattagctagggaattatgccaggag 3794067  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 38935647 - 38935603
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||| ||||| || ||||| ||||||||||||||||    
T  38935647 tggcagcaattcagtttaatgggttttcgtttaccaaaaccataa 38935603  T

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Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 205 - 410
Target Start/End: Complemental strand, 49452308 - 49452109
Alignment:
Q  205 tttactaagctgctcttttctcactttattttcagctcaatcgt-tttaattctcccaagattgaacgtgtgtattctccaccgatctcaagtatccaat 303  Q
    |||||||||||||||||||||||||| | |  |||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  49452308 tttactaagctgctcttttctcacttgaatcccagctctatcgtctttaattctgccaagattgaaagtgtgtattctccaccgatctcatgtatccaat 49452209  T
Q  304 cataacataattcttgattttgttgtcaatatgtgggttggcagcaattcaatttaaaggtttttcatttaccaaaaccataacattagtttctacatcc 403  Q
    || ||||| ||||||||||||       |||   ||| |||||||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||     
T  49452208 cacaacatgattcttgatttt-------atacaagggctggcagcaattcaatttaaaggtttcccatttacggaaaccataaaattagtttctacatca 49452116  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 32413954 - 32413998
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  32413954 tggcagcaattcaatttaatggtttttcatttaccaaaagcataa 32413998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 39860734 - 39860690
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  39860734 tggcagcaattcaatttaatggtttttcatttaccaaaagcataa 39860690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 15902312 - 15902356
Alignment:
Q  342 tggcagcaattcaatttaaaggtttttcatttaccaaaaccataa 386  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  15902312 tggcagcaattcaatttaatggtttttcatttaccaaaagcataa 15902356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6661214 - 6661174
Alignment:
Q  1 tacaagaaatcatgcaattagttagggaattatgccaggag 41  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  6661214 tacaagaaatcctgcaattagccagggaattatgccaggag 6661174  T

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