View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_12 (Length: 415)
Name: NF1175_low_12
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 31853665 - 31853275
Alignment:
| Q |
1 |
tcatcataagacacgtacattaacacatgtccccctgcatgtttttgccatataccccattgtttccctcttatttcatataaatcaatacacaaacaca |
100 |
Q |
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| T |
31853665 |
tcatcataagacacgtacattaacacatgtccccctgcatgtttttgccatataccccattgtttccctcttatttcatataaattaatacacaaacaca |
31853566 |
T |
|
| Q |
101 |
cgctcaaattcttcaatgtcatacaaacaataagctgaaaccatggcaatgaaaaccaagctttctttagctatctttcttttcttcctcttagccttat |
200 |
Q |
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| T |
31853565 |
cactcaaattcttcaatgtcatagagcaaataagctgaaaccatggcaatgaaaaccaagctttctttagctatctttcttttcttcctcttagccttat |
31853466 |
T |
|
| Q |
201 |
tatgttcaaacttagctatagctataggaagagaagaaactgacccagaactcaaaacttgtatacaccaatgcaaacaacaacgccaatatgatgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31853465 |
tatgttcaaacttagctatagctataggaagagaagaaactgacccagaactcaaaacttgtatacaccaatgcaaacaacaacgccaatatgatgaaga |
31853366 |
T |
|
| Q |
301 |
ggataagcgaatatgcatggacaagtgtgaggactatcatcggatgaagcaagagcgagagaaacgtcaacatcaacgtgaacatgaacat |
391 |
Q |
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| T |
31853365 |
ggataagggaatatgcatggacaagtgtgaggactatcatcggatgaagcaagagcgagagaaacgtcaacatcaacatcaacgtgaacat |
31853275 |
T |
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