View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_14 (Length: 339)
Name: NF1175_low_14
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 36862425 - 36862754
Alignment:
| Q |
5 |
gtgtataaaatttgttgagagagataaataaagcccttaattgtgtgtggatgatacatttgtttacaaagataatagtaatttgaaatatttaatataa |
104 |
Q |
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| T |
36862425 |
gtgtataaaatttgttgagagagataaataaaccccttaattgtgtgtggatgatacatttgtttacaaagataatagtaatttgaaatatttaatataa |
36862524 |
T |
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| Q |
105 |
gaagtaaatattcgttactgcaatagctagctggttataaactaagtagcttgtttgnnnnnnnatttattat-------nnnnnnncacacctttattc |
197 |
Q |
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| T |
36862525 |
gaagtaaatattcgttactgcaatagctagctggttataagctaagttgcttgtttgtttttttatttattataaaaaaaaaaaaaacacacctttattc |
36862624 |
T |
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| Q |
198 |
gattaatatatattgcaggtgtatttgactccaacacatattgcaatagttatggagtatgcatctagtggagatttatttgattatgtttgcagtaagg |
297 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36862625 |
gatta--atatattgcaggtgtatttgactccaacacatattgcaatagttatggagtatgcatctagtggagatttatttgattatgtttgcagtaagg |
36862722 |
T |
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| Q |
298 |
ggaaattaaacgaagatgaggtttactctctg |
329 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
36862723 |
ggaaattaaatgaagatgaggtttactctctg |
36862754 |
T |
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