View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_17 (Length: 320)
Name: NF1175_low_17
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 99 - 320
Target Start/End: Complemental strand, 24752990 - 24752769
Alignment:
| Q |
99 |
caaactgcaaaagagttgagagggaaacaccccctgggatgctttagcagtttaagaagtggatagaatccacattgacatcatgtatctcgtttacttc |
198 |
Q |
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| T |
24752990 |
caaactgcaaaagagttgagagggaaacaccccctgggatgctttagcagtttaagaagtggatagaatccacattgacatcatgtatctcgtttacttc |
24752891 |
T |
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| Q |
199 |
gcttcttggcttcaccatataggataactccaatgactgtaagagaatatcctaacattccagttactgataccggatttctaaatatcaaaatagagat |
298 |
Q |
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| T |
24752890 |
gcttcttggcttcaccatataggataactccaatgactgtaagagaatatcctaacattccagttactgataccggatttctaaatatcaaaatagagat |
24752791 |
T |
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| Q |
299 |
tacaactgccacagctcctttt |
320 |
Q |
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|||||||||||||||||||||| |
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| T |
24752790 |
tacaactgccacagctcctttt |
24752769 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 35019375 - 35019251
Alignment:
| Q |
195 |
cttcgcttcttggcttcaccatataggataactccaatgactgtaagagaatatcctaacattccagttactgataccggatttctaaatatcaaaatag |
294 |
Q |
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| T |
35019375 |
cttctctttttggcttcactgtaaagtacaactccaaggactgtgagtgaataacccatcattccagtgactgaaactgggtttctaaatattagaattg |
35019276 |
T |
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| Q |
295 |
agattacaactgccacagctccttt |
319 |
Q |
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| T |
35019275 |
aaactacaactgctacagccccttt |
35019251 |
T |
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