View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_2 (Length: 933)
Name: NF1175_low_2
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 32 - 903
Target Start/End: Original strand, 25430781 - 25431654
Alignment:
| Q |
32 |
ggaataatacatgaagtcgcaacttgatatactcctcagcacaatgcactcgttaagagaacaaatataagtatgcttgatatggctaggtttatgatga |
131 |
Q |
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| T |
25430781 |
ggaataatacatgaagtcgcaacttgatatactcctcagcacaatgcactcgttgagagaacaaatataagtatgcttgatatggctaggtttatgatga |
25430880 |
T |
|
| Q |
132 |
aagaaaagaagttaccacatgagttttggagttaagcattggatattgtagcttacatattgaatagatgtcccactaagaagataaaaactcaagttcc |
231 |
Q |
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| T |
25430881 |
aagaaaagaagttaccacatgagttttggagttaagcattggatactgtagcttacatattgaatagatgtcccactaagaagataaaaactcaagttcc |
25430980 |
T |
|
| Q |
232 |
tgaacaagtttggtcaagaagaaagtcatcggttgctcatcacagagtagttggttctttataatgtaagtgtatcccttatgctatnnnnnnnngctag |
331 |
Q |
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| T |
25430981 |
tgaacaagtttggtcaagaagaaagtcatcggttgctcatcacagagtagttggttctttataatgtaagtgtatcccttatgctataaaaaaaaattag |
25431080 |
T |
|
| Q |
332 |
aagacagcagcgagcctatgatcattgtaggttatcacaaaacttggagcatacagactactcaacctgttaacaatgaacactgggactgaaaaacaaa |
431 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |
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| T |
25431081 |
aagacaacagcgagcctataatcattgtaggttatcacaaaacttggagcatacagactactcaacccgttaacaatgaacactgggactggaaaaaaaa |
25431180 |
T |
|
| Q |
432 |
tgaatacaatgtctctactaagaacattgtaattgaagaaagccacacaaataaggagctcacaatcactaaaagtagtgaatgaagaagtgaactcaga |
531 |
Q |
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| T |
25431181 |
tgaatacaatgtctctactaagaacattgtaattgaagaaagccacacaaataaggagctcactatcactaaaagtagtgaatgaagaagtgaactcaga |
25431280 |
T |
|
| Q |
532 |
tgaaggtcaaaacaataatgtaaggtcacacagaaacaaactgattccta--agactagtagattgacaacttacttctgatgatgagataggtagtgct |
629 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
25431281 |
tgaaggtcaaaacatcaatgtaaggtcacacagaaacaaactgattcctataagactagtagattgacaacttatttctgatgatgagataggtagtgat |
25431380 |
T |
|
| Q |
630 |
ggtgaactaatgaattttgcaatgctagtagatgtagaaccaatttattacataatagcaatgcaagacaaaacctagaaggaagccatgataaaataac |
729 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
25431381 |
ggtgaactaatgaattttgcaatgctagcagatgtagaaccaatttattacataatagcaatgcaagacaaagcccagaaggaagccatgataaaataac |
25431480 |
T |
|
| Q |
730 |
caaagtcaattgagaataatcaaacatgtgaactaatcaagttaccaagcggtaataaatctattgatgttaaatggattttcaagctaaaactaaacct |
829 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25431481 |
caaagtcaattgagaataatcaaacatgtgaactaatcaagttaccgagcggtaataaatctattgatgttaaatggattttcaagctaaaactgaacct |
25431580 |
T |
|
| Q |
830 |
ttatgagaagattgagaagcatgaacctatactcgtggccaaaggattcttacaaagtgaaggctatgaataat |
903 |
Q |
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||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25431581 |
ttatgagaagattgagaagcacgaacctagactcgtgaccaaaggattcttacaaagtgaaggctatgaataat |
25431654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 12197257 - 12197117
Alignment:
| Q |
107 |
cttgatatggctaggtttatgatgaaagaaaagaagttaccacatgagttttggagttaagcattggatattgtagcttacatattgaatagatgtccca |
206 |
Q |
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||||||||||||||| ||||| ||| ||| |||||| |||| ||||| |||||| || ||| | | |||||| ||||||||| || ||||||||||||| |
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| T |
12197257 |
cttgatatggctaggattatgctgatagagaagaagctacctcatgaattttggggtaaagtagggaatattgcagcttacatcttaaatagatgtccca |
12197158 |
T |
|
| Q |
207 |
ctaagaagataaaaactcaagttcctgaacaagtttggtca |
247 |
Q |
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||||||| | || | |||||| |||||| | ||||||||| |
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| T |
12197157 |
ctaagaaattgaagaatcaagtgcctgaagaggtttggtca |
12197117 |
T |
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