View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1175_low_33 (Length: 247)

Name: NF1175_low_33
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1175_low_33
NF1175_low_33
[»] chr1 (16 HSPs)
chr1 (1-128)||(1661285-1661412)
chr1 (19-116)||(19936393-19936490)
chr1 (7-114)||(40419512-40419619)
chr1 (27-122)||(26016302-26016397)
chr1 (7-125)||(4379867-4379985)
chr1 (51-95)||(11584018-11584062)
chr1 (27-95)||(16142206-16142274)
chr1 (7-95)||(35672580-35672668)
chr1 (53-100)||(33285570-33285617)
chr1 (7-109)||(9592612-9592714)
chr1 (29-114)||(8391645-8391730)
chr1 (7-76)||(9509229-9509298)
chr1 (7-92)||(52442806-52442891)
chr1 (27-95)||(9599716-9599784)
chr1 (35-91)||(12807417-12807473)
chr1 (51-91)||(38877679-38877719)
[»] chr4 (23 HSPs)
chr4 (10-124)||(34233338-34233452)
chr4 (27-125)||(30853278-30853376)
chr4 (7-88)||(49987327-49987408)
chr4 (9-101)||(27991719-27991811)
chr4 (7-102)||(18499758-18499853)
chr4 (6-108)||(40933197-40933299)
chr4 (7-109)||(45205150-45205252)
chr4 (7-82)||(17900385-17900460)
chr4 (51-109)||(11389598-11389656)
chr4 (53-95)||(45569348-45569390)
chr4 (7-119)||(44359949-44360063)
chr4 (8-125)||(44860716-44860833)
chr4 (46-134)||(10775763-10775851)
chr4 (7-83)||(31403322-31403398)
chr4 (69-108)||(7544835-7544874)
chr4 (43-134)||(55578884-55578975)
chr4 (7-114)||(21106855-21106964)
chr4 (7-100)||(30807481-30807574)
chr4 (7-64)||(45423542-45423599)
chr4 (41-102)||(50680624-50680685)
chr4 (27-83)||(33709823-33709879)
chr4 (7-95)||(45094464-45094552)
chr4 (7-91)||(45185319-45185403)
[»] chr8 (12 HSPs)
chr8 (10-114)||(36143242-36143346)
chr8 (11-109)||(43732445-43732543)
chr8 (14-98)||(29735695-29735779)
chr8 (9-129)||(39953568-39953688)
chr8 (26-100)||(45512817-45512891)
chr8 (41-125)||(41444632-41444715)
chr8 (14-125)||(28239068-28239179)
chr8 (7-125)||(13171951-13172069)
chr8 (7-64)||(29520583-29520640)
chr8 (7-92)||(36545042-36545127)
chr8 (13-109)||(25288780-25288876)
chr8 (13-109)||(25300115-25300211)
[»] chr6 (8 HSPs)
chr6 (7-82)||(33998306-33998381)
chr6 (7-109)||(12134203-12134305)
chr6 (41-103)||(2079217-2079279)
chr6 (7-125)||(28027127-28027245)
chr6 (7-114)||(7513688-7513795)
chr6 (7-82)||(33083963-33084038)
chr6 (7-109)||(608037-608139)
chr6 (7-97)||(26291668-26291758)
[»] chr3 (16 HSPs)
chr3 (10-125)||(43308428-43308543)
chr3 (31-125)||(44395287-44395381)
chr3 (6-109)||(2341015-2341118)
chr3 (9-82)||(42510315-42510388)
chr3 (29-114)||(44134148-44134233)
chr3 (7-124)||(46567979-46568096)
chr3 (7-109)||(345013-345115)
chr3 (46-95)||(46367726-46367775)
chr3 (27-90)||(50249278-50249341)
chr3 (7-93)||(23534871-23534957)
chr3 (8-102)||(29919189-29919283)
chr3 (8-102)||(29968342-29968436)
chr3 (46-95)||(27917464-27917513)
chr3 (9-102)||(31142674-31142766)
chr3 (7-92)||(45236751-45236836)
chr3 (72-125)||(46146015-46146068)
[»] chr5 (15 HSPs)
chr5 (7-95)||(21093668-21093756)
chr5 (9-109)||(5305494-5305594)
chr5 (7-74)||(11002723-11002790)
chr5 (7-109)||(11728968-11729071)
chr5 (7-101)||(16134481-16134575)
chr5 (41-81)||(36123534-36123574)
chr5 (7-98)||(9234958-9235049)
chr5 (7-54)||(14667690-14667737)
chr5 (27-98)||(27998312-27998383)
chr5 (7-90)||(41110043-41110126)
chr5 (59-109)||(4460093-4460142)
chr5 (7-109)||(28186970-28187071)
chr5 (27-92)||(1275160-1275225)
chr5 (68-109)||(30588331-30588372)
chr5 (22-106)||(43558131-43558215)
[»] chr2 (11 HSPs)
chr2 (8-86)||(45077649-45077727)
chr2 (27-95)||(23714580-23714648)
chr2 (27-95)||(24102252-24102320)
chr2 (8-70)||(9647908-9647970)
chr2 (41-88)||(36039122-36039169)
chr2 (7-109)||(38429762-38429864)
chr2 (51-125)||(41763387-41763461)
chr2 (7-92)||(8180675-8180760)
chr2 (7-91)||(7825254-7825338)
chr2 (49-109)||(24583950-24584010)
chr2 (6-105)||(37393467-37393567)
[»] chr7 (13 HSPs)
chr7 (26-109)||(25579392-25579475)
chr7 (27-109)||(47848552-47848634)
chr7 (10-95)||(36514510-36514595)
chr7 (7-83)||(30200261-30200337)
chr7 (42-125)||(7189570-7189653)
chr7 (10-109)||(30664440-30664539)
chr7 (7-86)||(39811858-39811937)
chr7 (7-81)||(40830134-40830206)
chr7 (7-62)||(48736201-48736256)
chr7 (27-125)||(33072816-33072914)
chr7 (26-95)||(24550008-24550077)
chr7 (69-105)||(21517690-21517726)
chr7 (61-109)||(28628286-28628334)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-108)||(44173-44274)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1661412 - 1661285
Alignment:
Q  1 tgtcattcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661412 tgtcattcatttctaatcctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttca 1661313  T
Q  101 ccgcccaacgctctatcccatacaatat 128  Q
    ||||||||||||||||||||||||||||    
T  1661312 ccgcccaacgctctatcccatacaatat 1661285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 19936490 - 19936393
Alignment:
Q  19 ctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctat 116  Q
    ||||| |||||||||||| ||  ||| |||||||||||  ||||||| ||||||||||||| |||||| |||||||| || |||||||||| ||||||    
T  19936490 ctatcccatctagtcttaccactcatccaacacaacattctcatctccgctatgcttatttgattctcatgttggttcttaaccgcccaacactctat 19936393  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 40419619 - 40419512
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||||||||| |||||||| ||| || ||||||||| || |||| ||||||||||||  |||| |||||  ||||||||||| || ||| |||    
T  40419619 tcatttctaattctatctcatctagttttaccatacattcaacgcaccatcctcatctctgctacacttactttatgttcgtgttggttctttaccaccc 40419520  T
Q  107 aacgctct 114  Q
    ||| ||||    
T  40419519 aacactct 40419512  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 26016397 - 26016302
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccata 122  Q
    |||||||||| || |||| |||| ||||||| |||||||||||| ||||| |||||  || |||||||| || |||||||||| || | |||||||    
T  26016397 tctagtcttaccacacatccaacgcaacatcctcatctctgctacgcttactttatgttcttgttggttctttaccgcccaacactttgtcccata 26016302  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 4379985 - 4379867
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    |||||||||||  ||||   |||||||||| || |||| |||||||||||| ||||||| |||| ||||  |||||| ||||||||||| || || |||     
T  4379985 tcatttctaatcatatcttttctagtcttaccacacatccaacacaacatcctcatctcagctaagctttatttattttcgtgttggttctttactgcct 4379886  T
Q  107 aacgctctatcccatacaa 125  Q
    ||| |||| |||| |||||    
T  4379885 aacactctgtcccgtacaa 4379867  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 11584062 - 11584018
Alignment:
Q  51 caacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||    
T  11584062 caacatcctcatctctgctacgattattttattctcgtgttggtt 11584018  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 16142206 - 16142274
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||| || |||| ||||| ||||||||||| ||  |||||||||||| |||||||| ||||||    
T  16142206 tctagtcttaccacacatccaacataacatcttcatttccactatgcttatttgattctcgtattggtt 16142274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 35672668 - 35672580
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    ||||||||||| ||||| |||||||| ||| || ||||| ||  ||||||||||| ||  ||||   ||||||||||||||||||||||    
T  35672668 tcatttctaatcctatctcatctagttttaccacacattaaatgcaacatcttcaccttcgctacatttattttattctcgtgttggtt 35672580  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 33285617 - 33285570
Alignment:
Q  53 acatcttcatctctgctatgcttattttattctcgtgttggtttttca 100  Q
    |||||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  33285617 acatcttcatctctactacgctcattttattctcgtgttgatttttca 33285570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 9592714 - 9592612
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||| ||||| ||||||  |||||||||| ||  ||| |||| ||||||| ||||||||||||  |||| || |||||| ||||| || || |||||||    
T  9592714 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgattcttaaccgccc 9592615  T
Q  107 aac 109  Q
    |||    
T  9592614 aac 9592612  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 8391730 - 8391645
Alignment:
Q  29 tagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctct 114  Q
    |||||||| ||  ||| |||||||||||||||||||| ||||  |||| |||| ||||||||||  | || |||||||||| ||||    
T  8391730 tagtcttaccactcatccaacacaacatcttcatctccgctacacttactttactctcgtgttgactcttaaccgcccaacactct 8391645  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 9509298 - 9509229
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgctta 76  Q
    |||||||||||  ||||   |||||||||||||  ||| |||||||||||| |||||||||||| |||||    
T  9509298 tcatttctaatcatatcctgtctagtcttatcactcatccaacacaacatcctcatctctgctacgctta 9509229  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 52442806 - 52442891
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttg 92  Q
    |||||||||||  ||||   |||||||||| || |||| |||||||||||| |||| ||||||| ||||| |||||| | ||||||    
T  52442806 tcatttctaatcttatcttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttg 52442891  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 9599716 - 9599784
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||| ||  ||| |||||||||||| |||||||||||| ||||| || ||| | |||||||||    
T  9599716 tctagtcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattattgtgttggtt 9599784  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 12807417 - 12807473
Alignment:
Q  35 tatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgtt 91  Q
    ||||| |||| |||||||||||| ||||||  ||||||||||||||| |||| ||||    
T  12807417 tatcatacatccaacacaacatcatcatcttcgctatgcttattttactctcatgtt 12807473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 38877679 - 38877719
Alignment:
Q  51 caacatcttcatctctgctatgcttattttattctcgtgtt 91  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  38877679 caacatcctcatctctgctacacttattttattctcgtgtt 38877719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 34233338 - 34233452
Alignment:
Q  10 tttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||  |||  ||||| |||||| |||||||||| ||||| |||||||    
T  34233338 tttctaatcctatcacatctagtcttatcacacatccaacacaacatcatcatctccactacacttatcttattcccgtgttggttcttcactgcccaac 34233437  T
Q  110 gctctatcccataca 124  Q
     |||| | |||||||    
T  34233438 tctctgttccataca 34233452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 30853376 - 30853278
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||||||||| || |||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||  ||| || ||| |||||||||||    
T  30853376 tctagtcttaccatacatccaacacaacatcttcatctccgctgcgcttattttattctcgtgttggttttttactaccctacactccatcccatacaa 30853278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 49987408 - 49987327
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgt 88  Q
    ||||||||||| ||||||  ||||||||||  | ||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  49987408 tcatttctaatcctatcatgtctagtcttactaaacattcaacacaacatcctcatctctgctaagcttattatattctcgt 49987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27991719 - 27991811
Alignment:
Q  9 atttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcac 101  Q
    |||| |||||||||| |||||| ||||| || |||| ||||||||||||||||| |||||||  ||||||||||  ||||||||||| |||||    
T  27991719 atttttaattctatctcatctaatcttaccacacatccaacacaacatcttcatttctgctacacttattttatgttcgtgttggttattcac 27991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 18499853 - 18499758
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcacc 102  Q
    |||||| || ||||||| | ||||||||||||| |||| ||||||||||||||||| |||||||||||||   |||  ||||||||||| ||||||    
T  18499853 tcatttttagttctatctcgtctagtcttatcacacatccaacacaacatcttcatttctgctatgcttaccgtatgttcgtgttggttcttcacc 18499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 40933197 - 40933299
Alignment:
Q  6 ttcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcc 105  Q
    |||||||||||||||||||  | | |||||| || ||||||||| ||||||| ||||||  ||||  ||||||||| ||||||||||||| ||  |||||    
T  40933197 ttcatttctaattctatcatgtattgtcttaccacacattcaacgcaacatcctcatctacgctacacttattttactctcgtgttggttcttttccgcc 40933296  T
Q  106 caa 108  Q
    |||    
T  40933297 caa 40933299  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 45205150 - 45205252
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||| ||||| ||||| | |||||||||| ||  ||| |||||||||||| ||||||| |||| ||||| || ||||||||||||||| || || ||||    
T  45205150 tcattcctaatcctatcccgtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgccc 45205249  T
Q  107 aac 109  Q
    |||    
T  45205250 aac 45205252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 17900460 - 17900385
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttat 82  Q
    |||||||||||| |||| |||||||||||| || |||| |||| ||||||| |||| ||||||| ||||| |||||    
T  17900460 tcatttctaattttatcccatctagtcttaccacacatccaacgcaacatcctcatttctgctacgcttactttat 17900385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 11389656 - 11389598
Alignment:
Q  51 caacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||| |||||||||||| ||||| |||||||||| ||||||| || ||||||||||    
T  11389656 caacatcctcatctctgctacgcttactttattctcgagttggttcttaaccgcccaac 11389598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 45569348 - 45569390
Alignment:
Q  53 acatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  45569348 acatcctcatctccgctatgcttattttattctcgtgttggtt 45569390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 44360063 - 44359949
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttatttt---attctcgtgttggtttttcaccg 103  Q
    ||||||||||||||||| |  |||||| || || |||| ||||||||||| | |||||| |||| ||||| |||   ||| || ||||||||||| ||||    
T  44360063 tcatttctaattctatctcgcctagtcctaccacacatccaacacaacatat-catctcagctacgcttaatttcttattttcttgttggtttttgaccg 44359965  T
Q  104 cccaacgctctatccc 119  Q
    |||||| |||||||||    
T  44359964 cccaacactctatccc 44359949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 44860833 - 44860716
Alignment:
Q  8 catttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccca 107  Q
    ||||||||||  |||  |||||||||||| || |||| |||||||||||| |||| |||||||  |||| |||||| ||   |||||| ||||| |||||    
T  44860833 catttctaatcttattccatctagtcttaccacacatccaacacaacatcctcatttctgctacacttaatttattttctccttggttcttcacagccca 44860734  T
Q  108 acgctctatcccatacaa 125  Q
    || |||  ||||||||||    
T  44860733 acactcagtcccatacaa 44860716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 10775763 - 10775851
Alignment:
Q  46 caacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaatattattgg 134  Q
    |||||||||||| |||||||||||| ||||| |||||| | |  || ||| || |||||||||| |||| |||||||||| || |||||    
T  10775763 caacacaacatcatcatctctgctacgcttaatttatttttgcattagttctttaccgcccaacactctttcccatacaacatcattgg 10775851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 31403322 - 31403398
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttatt 83  Q
    ||||||||||| ||||| | |||| ||| | || ||||||||| ||||||| |||||||||||| ||||| ||||||    
T  31403322 tcatttctaatcctatcccgtctaatctcaccacacattcaactcaacatcatcatctctgctacgcttaatttatt 31403398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 7544835 - 7544874
Alignment:
Q  69 tatgcttattttattctcgtgttggtttttcaccgcccaa 108  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  7544835 tatgcttatgttattctcgtgttggttcttcaccgcccaa 7544874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 55578975 - 55578884
Alignment:
Q  43 attcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaatattattgg 134  Q
    ||||||||||||||| |||| | |||||  |||| || ||||||||||||||| || |||||||||| ||  || |||||||| ||| ||||    
T  55578975 attcaacacaacatcctcatatatgctacacttaattgattctcgtgttggttcttaaccgcccaacacttcataccatacaacattgttgg 55578884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 21106964 - 21106855
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgct--atgcttattttattctcgtgttggtttttcaccgc 104  Q
    ||||||||||||||||||| |||||||||| || ||||  ||| ||||||| ||||| |  ||  |  ||||||||||| || |||||||| || |||||    
T  21106964 tcatttctaattctatcacgtctagtcttaccacacatcgaacccaacatcctcatcaccactacactcttattttattgtcatgttggttcttaaccgc 21106865  T
Q  105 ccaacgctct 114  Q
    ||||| ||||    
T  21106864 ccaacactct 21106855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 30807574 - 30807481
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttca 100  Q
    ||||| |||||||||||||||||||| |||  | ||||||||| ||||||| || | ||||||| ||| | |||||  ||||||| ||| ||||    
T  30807574 tcattcctaattctatcacatctagttttactacacattcaacgcaacatcctcgtttctgctacgctgactttatgttcgtgttagttcttca 30807481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 45423599 - 45423542
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatct 64  Q
    ||||||||||||||||| | |||||||||| || |||  |||||||||||| ||||||    
T  45423599 tcatttctaattctatcccgtctagtcttaccacacaaccaacacaacatcctcatct 45423542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 50680685 - 50680624
Alignment:
Q  41 acattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcacc 102  Q
    ||||||||||||||||| || |||| ||||| |||||| |||||  ||||||||| ||||||    
T  50680685 acattcaacacaacatcctcgtctccgctatacttattatattcgtgtgttggttcttcacc 50680624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33709879 - 33709823
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttatt 83  Q
    |||||||||| || |||| |||| ||||||| |||||||||||| ||||| ||||||    
T  33709879 tctagtcttaccacacatccaacgcaacatcatcatctctgctaggcttaatttatt 33709823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 45094464 - 45094552
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    ||||||||||| |||||   |||||| |||  | |||| |||||||||||| |||||||  |||||||||||||| || | ||||||||    
T  45094464 tcatttctaatactatcttgtctagtattactacacatccaacacaacatcctcatctccactatgcttattttaatcgcatgttggtt 45094552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 45185319 - 45185403
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgtt 91  Q
    ||||||||||||||||| ||||||||||||  | |||| |||||||| ||  | ||| | ||||  |||| ||||||||||||||    
T  45185319 tcatttctaattctatctcatctagtcttactacacatccaacacaatattcttatcaccgctacacttactttattctcgtgtt 45185403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 36143346 - 36143242
Alignment:
Q  10 tttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||| ||||| |||||||||||| || ||   |||||||||||| |||||||||||| | | |||||||||||||||||||| |||||||||||||    
T  36143346 tttctaatcctatctcatctagtcttaccacacgaccaacacaacatcctcatctctgctacgttgattttattctcgtgttggttcttcaccgcccaac 36143247  T
Q  110 gctct 114  Q
     ||||    
T  36143246 actct 36143242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 43732543 - 43732445
Alignment:
Q  11 ttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||||||||||||||||||||| || |||| ||||  |||||| |||| ||||||| || ||| ||||||| ||||||||| ||||||| |||||    
T  43732543 ttctaattctatcacatctagtcttaccacacatccaacgtaacatcctcatttctgctacgcatatcttattcttgtgttggttcttcaccgtccaac 43732445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 29735779 - 29735695
Alignment:
Q  14 taattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggttttt 98  Q
    ||||||| || | |||||||||| ||  ||| |||||||||||| |||||||  ||| |||||||| ||||||||||||||||||    
T  29735779 taattctttctcgtctagtcttaccattcatccaacacaacatcctcatctccactacgcttatttcattctcgtgttggttttt 29735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 39953568 - 39953688
Alignment:
Q  9 atttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaa 108  Q
    |||||||||| |||||  | || ||||| || |||| |||| ||||||  |||||||||||| ||| | |||||  ||||||||||| || ||||| |||    
T  39953568 atttctaattatatcatgtttaatcttaccacacatccaacgcaacattctcatctctgctacgctaactttatgttcgtgttggttctttaccgctcaa 39953667  T
Q  109 cgctctatcccatacaatatt 129  Q
    | |||| ||||||||||||||    
T  39953668 cactctgtcccatacaatatt 39953688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 45512817 - 45512891
Alignment:
Q  26 atctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttca 100  Q
    ||||||||||| || |||| ||||  |||||  ||||||| ||||||||||||||||| ||||||||||| ||||    
T  45512817 atctagtcttaccacacatccaacgaaacattctcatctccgctatgcttattttattttcgtgttggttcttca 45512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 41444632 - 41444715
Alignment:
Q  41 acattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||| |||||||||||| ||||||| |||||| || ||||||| | |||||||||||| || ||||||| |||  ||||||||||    
T  41444632 acatccaacacaacatcctcatctccgctatgtttcttttatttttgtgttggttttt-acagcccaacactccgtcccatacaa 41444715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 28239068 - 28239179
Alignment:
Q  14 taattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctc 113  Q
    ||||||||| ||||  |||||||||| |||| |||||||||||| |  ||||  |||  |||||||||||||| || ||||| ||| |||| |||| |||    
T  28239068 taattctattacatacagtcttatcacacatccaacacaacatccttgtctccactactcttattttattctcatgctggttcttctccgctcaacactc 28239167  T
Q  114 tatcccatacaa 125  Q
    |||  |||||||    
T  28239168 tatgacatacaa 28239179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 13171951 - 13172069
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||| ||||| | ||||||||||  | |||| |||  ||||||  ||||||||| | |||||| |||||| |  |||||||| || |||||||    
T  13171951 tcatttctaatcctatcccgtctagtcttactacacatccaatgcaacattctcatctctgatgtgcttaatttatttttatgttggttcttaaccgccc 13172050  T
Q  107 aacgctctatcccatacaa 125  Q
    ||| |||| | ||||||||    
T  13172051 aacactctgtaccatacaa 13172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 29520640 - 29520583
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatct 64  Q
    ||||||||||| ||||| |||||||||||| || |||| |||| ||||||| ||||||    
T  29520640 tcatttctaatcctatcccatctagtcttaccacacatccaacgcaacatcctcatct 29520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 36545127 - 36545042
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttg 92  Q
    ||||| ||||| ||||||  |||||||||| ||  ||| |||||||||||| ||||||||||||  |||| || |||||| |||||    
T  36545127 tcattcctaatcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttg 36545042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 25288876 - 25288780
Alignment:
Q  13 ctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||| ||||| |||||||||||| ||   || || | ||||||| |||| |||||||  ||||||| ||||||||||||| | || ||||||||||    
T  25288876 ctaatcctatctcatctagtcttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaac 25288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 25300211 - 25300115
Alignment:
Q  13 ctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||| ||||| |||||||||||| ||   || || | ||||||| |||| |||||||  ||||||| ||||||||||||| | || ||||||||||    
T  25300211 ctaatcctatctcatctagtcttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaac 25300115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 33998306 - 33998381
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttat 82  Q
    ||||||||||| |||||||||||||||||| || |||| |||| |||||||||||||||||||| ||||| |||||    
T  33998306 tcatttctaatcctatcacatctagtcttaccacacatccaacgcaacatcttcatctctgctacgcttaatttat 33998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 12134203 - 12134305
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||||||||  ||||| |||||  || |||| |||||||||||  |||||||||||||||||| |||||||||||||| ||| ||| | ||||    
T  12134203 tcatttctaattctatatcatcttgtcttgccacacatccaacacaacattctcatctctgctatgcttagtttattctcgtgttagttcttcgctgccc 12134302  T
Q  107 aac 109  Q
    |||    
T  12134303 aac 12134305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 2079279 - 2079217
Alignment:
Q  41 acattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccg 103  Q
    |||| |||||||||||| ||||||| |||| |||||||||||||||||||| ||| |||||||    
T  2079279 acatccaacacaacatcatcatctccgctacgcttattttattctcgtgttagttcttcaccg 2079217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 28027127 - 28027245
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||| ||||| ||||  |||||||||||| ||  ||| ||||| |||||| || ||||||||||||||| || |||||| |||||||| || ||| |||    
T  28027127 tcattcctaatcctatgccatctagtcttaccactcatccaacataacatcctcgtctctgctatgcttacttgattctcatgttggttcttaacctccc 28027226  T
Q  107 aacgctctatcccatacaa 125  Q
    ||| ||| || ||||||||    
T  28027227 aacactccataccatacaa 28027245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 7513688 - 7513795
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    |||||||||||| |||| | |||||||||| || ||| ||||  ||||||||| ||||||||||  ||||  ||||  ||||| |||||||| |||||||    
T  7513688 tcatttctaattatatcgcgtctagtcttaccacacactcaaggcaacatctttatctctgctactcttaacttatgttcgtgctggttttttaccgccc 7513787  T
Q  107 aacgctct 114  Q
    ||| ||||    
T  7513788 aacactct 7513795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 33084038 - 33083963
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttat 82  Q
    ||||||||||||||||| |||||||||||| || |||| |||| || |||| |||| ||||||| ||||| |||||    
T  33084038 tcatttctaattctatcccatctagtcttaccacacatccaacgcagcatcctcatttctgctacgcttactttat 33083963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 608139 - 608037
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||| ||||| |||||  ||||||||||| ||  ||| ||||  |||||| ||||||| ||||  |||| |||||||||||||||| | || |||||||    
T  608139 tcattcctaatcctatcctatctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctcttaaccgccc 608040  T
Q  107 aac 109  Q
    |||    
T  608039 aac 608037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 26291758 - 26291668
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttt 97  Q
    ||||| ||||| ||||||  ||||| |||| || ||||||||||||||||| |||||||   ||  |||| ||||||||| ||||||||||    
T  26291758 tcattcctaatactatcaagtctagacttaccacacattcaacacaacatcatcatctcaattacacttactttattctcatgttggtttt 26291668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 43308543 - 43308428
Alignment:
Q  10 tttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||| ||||||  |||||||||| || | ||||||| ||||| |||| |||| | || | |||||||||||||||||||||| || ||||||||||    
T  43308543 tttctaatcctatcatgtctagtcttaccacaaattcaacgcaacaccttcgtctcggttacgattattttattctcgtgttggttctttaccgcccaac 43308444  T
Q  110 gctctatcccatacaa 125  Q
     ||| |||||||||||    
T  43308443 actccatcccatacaa 43308428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 44395381 - 44395287
Alignment:
Q  31 gtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||||| || |||||||||||||| || |||||||| |||||||||| ||||||| ||||||||| || |||||||||| || | ||||||||||    
T  44395381 gtcttaccacacattcaacacaacttcctcatctcttctatgcttatcttattcttgtgttggttctttaccgcccaacactatgtcccatacaa 44395287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 2341015 - 2341118
Alignment:
Q  6 ttcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcc 105  Q
    |||||||||||||||||||  |||||||||| || |||| |||  ||||||| |||||||  |||| ||||||||||||||| |||| || || ||| ||    
T  2341015 ttcatttctaattctatcatgtctagtcttaccacacatccaatgcaacatcctcatctccactatccttattttattctcgcgttgattctttaccacc 2341114  T
Q  106 caac 109  Q
    ||||    
T  2341115 caac 2341118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 42510315 - 42510388
Alignment:
Q  9 atttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttat 82  Q
    ||||||||  ||||| |||||||||||| || |||| |||  ||||||| ||||||||||||||||||||||||    
T  42510315 atttctaaacctatcccatctagtcttaccacacatccaatgcaacatcctcatctctgctatgcttattttat 42510388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 44134148 - 44134233
Alignment:
Q  29 tagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctct 114  Q
    ||||||||||| |||| ||||| |||||  ||||||   ||| |||||||| ||||||||||||||||||||||| ||||| ||||    
T  44134148 tagtcttatcacacatccaacataacattatcatcttatctaagcttatttcattctcgtgttggtttttcaccgtccaacactct 44134233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 46568096 - 46567979
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||||| |||   |||||||||| || |||| |||||||||||| ||||||||||||  ||||  ||||  ||||| ||||| |||||||||     
T  46568096 tcatttctaattcaatctggtctagtcttaacacacatccaacacaacatcctcatctctgctacacttaacttatgttcgtgctggttcttcaccgcct 46567997  T
Q  107 aacgctctatcccataca 124  Q
    ||| |||| |||| ||||    
T  46567996 aacactctgtcccgtaca 46567979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 345013 - 345115
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||| ||||| | |||||||||| || | || ||||| |||||| | || || |||||||||| |||||||| ||||||||| || ||||| |    
T  345013 tcatttctaatcctatctcgtctagtcttaccacaaatccaacataacatcctaatttccgctatgcttactttattcttgtgttggttcttaaccgctc 345112  T
Q  107 aac 109  Q
    |||    
T  345113 aac 345115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 46367726 - 46367775
Alignment:
Q  46 caacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||||| |||||||| |||  |||||||||||||||||||||||    
T  46367726 caacacaacatcctcatctctactacacttattttattctcgtgttggtt 46367775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 50249341 - 50249278
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgt 90  Q
    ||||||| || || |||| ||||  |||||| ||||||| ||||||||||||||||||||||||    
T  50249341 tctagtcctaccacacatccaacgaaacatcatcatctccgctatgcttattttattctcgtgt 50249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 23534871 - 23534957
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttgg 93  Q
    |||||||||||  ||||  ||||||| |||||| ||||  ||| ||||||| || |||| |||| ||||||||||||||| ||||||    
T  23534871 tcatttctaatcttatctgatctagttttatcaaacatctaacgcaacatcctcttctccgctacgcttattttattctcatgttgg 23534957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 29919283 - 29919189
Alignment:
Q  8 catttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcacc 102  Q
    ||||||||||  |||| | |||| || || || |||| |||||||||||| |||||||  |||  || |||||||||||||||||||| ||||||    
T  29919283 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctccactacactgattttattctcgtgttggttcttcacc 29919189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 29968436 - 29968342
Alignment:
Q  8 catttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcacc 102  Q
    ||||||||||  |||| | |||| || || || |||| |||||||||||| |||||||  |||  || |||||||||||||||||||| ||||||    
T  29968436 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctccactacactgattttattctcgtgttggttcttcacc 29968342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 27917513 - 27917464
Alignment:
Q  46 caacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||||| |||||||||||| ||||| || |||||||| ||||||    
T  27917513 caacacaacatcctcatctctgctacgcttacttgattctcgttttggtt 27917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 31142674 - 31142766
Alignment:
Q  9 atttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcacc 102  Q
    ||||||||| |||| |  ||||||| || || |||| ||||| ||||| ||||| | ||||| ||||||||||||||||||||| || ||||||    
T  31142674 atttctaatcctattatctctagtcgtaccacacatccaaca-aacattttcatatttgctacgcttattttattctcgtgttgattcttcacc 31142766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 45236836 - 45236751
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttg 92  Q
    |||||||||||  ||||   |||||||||| || |||| |||| ||||||| | ||||| |||| ||||| |||||||||||||||    
T  45236836 tcatttctaatcatatccagtctagtcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 45236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 46146068 - 46146015
Alignment:
Q  72 gcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||||||||||||| ||||||||| || |||||||||| ||  |||||||||||    
T  46146068 gcttattttattcttgtgttggttctttaccgcccaacacttcatcccatacaa 46146015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 21093756 - 21093668
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    ||||||||||||| |||||||||||||||| || |||| |||| ||||||| |||| ||  |||  |||||||||||||||||||||||    
T  21093756 tcatttctaattccatcacatctagtcttaccacacatacaacgcaacatcctcatatccactacacttattttattctcgtgttggtt 21093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 5305594 - 5305494
Alignment:
Q  9 atttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaa 108  Q
    |||||||||||||||   |||||||||| || |||| |||| |||||||  | ||| |||||| ||||||||||||||||||| |||  | |||||||||    
T  5305594 atttctaattctatcttgtctagtcttaccacacatccaacgcaacatccccgtctttgctattcttattttattctcgtgttcgttcataaccgcccaa 5305495  T
Q  109 c 109  Q
    |    
T  5305494 c 5305494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 11002723 - 11002790
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgct 74  Q
    ||||||||||||||||| ||||| |||||| || |||| || | ||||||| ||||||||||||||||    
T  11002723 tcatttctaattctatcccatctcgtcttaccacacatccagcgcaacatcctcatctctgctatgct 11002790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 11729071 - 11728968
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacat-cttcatctctgctatgcttattttattctcgtgttggtttttcaccgcc 105  Q
    |||||| |||||||||||  ||||||||||||| ||||  ||| |||||| | ||||||||||||| | ||||||| |||||||||| ||| | ||| ||    
T  11729071 tcatttataattctatcatgtctagtcttatcatacatctaacgcaacattcctcatctctgctattcgtattttactctcgtgttgatttgttaccacc 11728972  T
Q  106 caac 109  Q
    ||||    
T  11728971 caac 11728968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 16134481 - 16134575
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcac 101  Q
    |||||||||||| |||| |||||||||||| || |||| |||||||||||| |||| | |||||| |||| | |||  | ||||||||| |||||    
T  16134481 tcatttctaattttatctcatctagtcttaccatacatccaacacaacatcctcatttatgctatacttactatatgtttgtgttggttcttcac 16134575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 36123534 - 36123574
Alignment:
Q  41 acattcaacacaacatcttcatctctgctatgcttatttta 81  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  36123534 acatccaacacaacatcttcatctctgctacgcttatttta 36123574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 9235049 - 9234958
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggttttt 98  Q
    |||||| |||| ||||| | |||||||||| || |||| |||  |||||| | ||||||||||  |||||||||||||| ||||| ||||||    
T  9235049 tcatttataatcctatcccgtctagtcttaccacacatccaatgcaacatttccatctctgctcagcttattttattcttgtgttagttttt 9234958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 14667737 - 14667690
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaac 54  Q
    ||||||||||||||| | ||||||||||||||| |||| |||||||||    
T  14667737 tcatttctaattctacctcatctagtcttatcacacatccaacacaac 14667690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 27998383 - 27998312
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggttttt 98  Q
    |||||||||| || |||| |||| ||||||| ||||||||| |||||||| || | | ||||||||||||||    
T  27998383 tctagtcttaccacacatccaacgcaacatcctcatctctgatatgcttaattcactttcgtgttggttttt 27998312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 41110043 - 41110126
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgt 90  Q
    ||||||||||| ||||  |||||||||| |  | |||| || | |||||| ||||||| ||||| |||||||||||||||||||    
T  41110043 tcatttctaatcctattccatctagtctcactacacatccagcgcaacattttcatctttgctacgcttattttattctcgtgt 41110126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 4460142 - 4460093
Alignment:
Q  59 tcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||||||    
T  4460142 tcatctctgctacacttattttattcttgtgttgg-ttttcaccgcccaac 4460093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 28186970 - 28187071
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||||||||| ||| ||  |||||||||| || |||| |||  ||||||  ||||||||| | |||||||||| |||| ||||||||| || |||||||    
T  28186970 tcatttctaatcctaccatgtctagtcttaccacacatccaatgcaacattctcatctctgatgtgcttattttgttcttgtgttggttctt-accgccc 28187068  T
Q  107 aac 109  Q
    |||    
T  28187069 aac 28187071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 1275225 - 1275160
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttg 92  Q
    |||||||||| ||  ||| |||| ||||||| |||||||||||||||||| || |||||| |||||    
T  1275225 tctagtcttaccactcatccaacgcaacatcctcatctctgctatgcttacttgattctcatgttg 1275160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 30588372 - 30588331
Alignment:
Q  68 ctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||    
T  30588372 ctatgcttattttattctcgtgttggtgttttaccacccaac 30588331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 43558131 - 43558215
Alignment:
Q  22 tcacatctagtcttatcagacattcaacacaacatcttcatc-tctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    |||| |||||||||| || |||| |||| ||||||| ||||| ||| ||| || ||| ||||||||||||||||| ||||||||||    
T  43558131 tcacgtctagtcttaccacacatccaacgcaacatcctcatcatct-ctacgcatatcttattctcgtgttggttcttcaccgccc 43558215  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 45077727 - 45077649
Alignment:
Q  8 catttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctc 86  Q
    ||||||||||||||||   |||||||||| || |||| |||| ||||||| ||||||| ||||||||||||||||||||    
T  45077727 catttctaattctatctagtctagtcttaccacacatccaacgcaacatcctcatctcagctatgcttattttattctc 45077649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 23714580 - 23714648
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||| || |||| |||||||||||  | |||||||||||||||| |||||| |||||||||||    
T  23714580 tctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggtt 23714648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 24102252 - 24102320
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||| || |||| |||||||||||  | |||||||||||||||| |||||| |||||||||||    
T  24102252 tctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggtt 24102320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 9647908 - 9647970
Alignment:
Q  8 catttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgcta 70  Q
    ||||||||||  ||||||||||||||||| || |||| |||| ||||||| ||||||||||||    
T  9647908 catttctaatcttatcacatctagtcttaccacacatccaacgcaacatcctcatctctgcta 9647970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 36039169 - 36039122
Alignment:
Q  41 acattcaacacaacatcttcatctctgctatgcttattttattctcgt 88  Q
    |||| ||||||||||||||||||||||||| | ||| |||||||||||    
T  36039169 acatccaacacaacatcttcatctctgctacgattactttattctcgt 36039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 38429864 - 38429762
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    ||||| ||||| ||||||  |||||||||| ||  ||| |||| ||||||| ||||||| ||||  |||| | || ||||||||||||| || |||||||    
T  38429864 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttggttcttaaccgccc 38429765  T
Q  107 aac 109  Q
    |||    
T  38429764 aac 38429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 41763387 - 41763461
Alignment:
Q  51 caacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    ||||||| ||||||| ||||  |||| |||| ||||||||||||| || |||||||||| |||| | ||||||||    
T  41763387 caacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctgtaccatacaa 41763461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 8180760 - 8180675
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttg 92  Q
    ||||| ||||| ||||||  |||||||||| ||  ||| |||||||||||| ||||||||||||  |||| || |||||| |||||    
T  8180760 tcattcctaatcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttg 8180675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 7825338 - 7825254
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgtt 91  Q
    |||||||||||  ||||   |||||||||| || |||| |||| ||||||| | |||||||||| ||||| ||||||||| ||||    
T  7825338 tcatttctaatcatatccagtctagtcttaccacacatccaacgcaacatcctaatctctgctacgcttactttattctcatgtt 7825254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 24583950 - 24584010
Alignment:
Q  49 cacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||||||||||||||||||  |||| || ||||||||||||  | || ||||||||||    
T  24583950 cacaacatcttcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaac 24584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 37393467 - 37393567
Alignment:
Q  6 ttcatttctaattctatcacatctagtcttatcaga-cattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgc 104  Q
    ||||||||| ||  |||| |||||||||||| || | |||||||||||||||| || |||   |||  ||||||||||||||||||| ||| |||| |||    
T  37393467 ttcatttctgatcatatctcatctagtcttaccacaacattcaacacaacatcctcgtcttctctacacttattttattctcgtgtttgttcttcatcgc 37393566  T
Q  105 c 105  Q
    |    
T  37393567 c 37393567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 25579392 - 25579475
Alignment:
Q  26 atctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||| ||| || |||| |||| ||||||| |||||||  ||| |||||||||||||||||||||||| || ||||||||||    
T  25579392 atctagtattaccacacatccaacgcaacatcctcatctcctctacgcttattttattctcgtgttggttcttaaccgcccaac 25579475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 47848634 - 47848552
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||||| || |||| |||||||||||| |||||||  |||  ||||||||||||||||||||||| || ||| ||||||    
T  47848634 tctagtcttaccacacatccaacacaacatcctcatctcccctagacttattttattctcgtgttggttcttaaccacccaac 47848552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 36514510 - 36514595
Alignment:
Q  10 tttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||||||| | | |||||||| || |||| |||| ||||||| ||||||||||||  |||| |||||| |||||||||||    
T  36514510 tttctaattctatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggtt 36514595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 30200261 - 30200337
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttatt 83  Q
    |||||||||||  |||| |||||| ||||| || |||| |||||||||||| ||||||||||||  |||| ||||||    
T  30200261 tcatttctaatcatatcccatctaatcttaccacacatccaacacaacatcctcatctctgctacacttagtttatt 30200337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 7189570 - 7189653
Alignment:
Q  42 cattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||||||||||||||| |||||||  ||||||||| || ||| | ||||||||| || ||| |||||| |||| | ||||||||    
T  7189570 cattcaacacaacatcctcatctccactatgcttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 7189653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 30664539 - 30664440
Alignment:
Q  10 tttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    ||||||||| |||| ||||||| ||||||| ||||  ||||||||||| ||||||   ||||  ||||||| ||||| || ||||| |||||| ||||||    
T  30664539 tttctaattttatctcatctagacttatcatacatcgaacacaacatcctcatctacactatatttatttttttctcatgctggttcttcaccacccaac 30664440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 39811937 - 39811858
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctc 86  Q
    ||||||||||| ||||||| |||||||||| || |||| |||  ||||||| |||| || |||| |||| ||||||||||    
T  39811937 tcatttctaatcctatcacgtctagtcttaccacacatccaaagcaacatcctcatatccgctacgcttgttttattctc 39811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 40830206 - 40830134
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttatttta 81  Q
    ||||||||||||||||||  |||| | ||| ||  |||||||||||||||| | |||||||||| ||||||||||    
T  40830206 tcatttctaattctatcatgtctacttttagca--cattcaacacaacatccttatctctgctacgcttatttta 40830134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 48736201 - 48736256
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcat 62  Q
    |||||||||||| |||| |||||||||||| || ||||||||| ||||||| ||||    
T  48736201 tcatttctaattttatctcatctagtcttaccacacattcaacgcaacatcctcat 48736256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 33072914 - 33072816
Alignment:
Q  27 tctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgcccaacgctctatcccatacaa 125  Q
    |||||||||| ||  ||| |||| ||||||| ||||||||||||  ||||||| |||||| |||||  | || |||||||||| |||| | ||||||||    
T  33072914 tctagtcttaccactcatccaacgcaacatcatcatctctgctacacttatttgattctcatgttgactcttaaccgcccaacactctgtaccatacaa 33072816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 24550008 - 24550077
Alignment:
Q  26 atctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtt 95  Q
    |||||||||||  | |||| |||||||||||| |||||||||||| || || |||||| | |||||||||    
T  24550008 atctagtcttacaacacatccaacacaacatcctcatctctgctacgcataatttatttttgtgttggtt 24550077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 21517690 - 21517726
Alignment:
Q  69 tatgcttattttattctcgtgttggtttttcaccgcc 105  Q
    ||||||||||||||||||||||||||| || ||||||    
T  21517690 tatgcttattttattctcgtgttggttcttaaccgcc 21517726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28628286 - 28628334
Alignment:
Q  61 atctctgctatgcttattttattctcgtgttggtttttcaccgcccaac 109  Q
    |||||||||| ||||| |||||||||||||||||| |  ||||||||||    
T  28628286 atctctgctacgcttactttattctcgtgttggttctcaaccgcccaac 28628334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 44173 - 44274
Alignment:
Q  7 tcatttctaattctatcacatctagtcttatcagacattcaacacaacatcttcatctctgctatgcttattttattctcgtgttggtttttcaccgccc 106  Q
    |||||| |||| ||||  |||||||||||| |  |||| |||| ||||||| ||||||| |||  |||||||||||||||||||| |||  |||||||||    
T  44173 tcatttttaatactataccatctagtcttaccgcacatccaacgcaacatcctcatctccgctgcgcttattttattctcgtgtttgttcctcaccgccc 44272  T
Q  107 aa 108  Q
    ||    
T  44273 aa 44274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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