View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_4 (Length: 617)
Name: NF1175_low_4
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 26 - 596
Target Start/End: Complemental strand, 44805775 - 44805205
Alignment:
| Q |
26 |
cactgcctctagtcaagtcacttctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaaatctcactgcctctagtcaagtcact |
125 |
Q |
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| T |
44805775 |
cactgcctctattcaagtcacttctcctgttaaagccatagagtcgcccaaaaaggaaactagccaaaagaaaaatctcactgcctctagtcaagtcact |
44805676 |
T |
|
| Q |
126 |
tctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaaattttggaaccaagttgaaagaaaatctcagaatgaactctgcaattt |
225 |
Q |
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| T |
44805675 |
tctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaatttttggaaccaagttgaaagaaaatctcagaatgaactctgcaattt |
44805576 |
T |
|
| Q |
226 |
caaaatctgcttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaaagagtggggtcaagaaatatgg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805575 |
caaaatctgcttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaaagagtggggtcaagaaatatgg |
44805476 |
T |
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| Q |
326 |
aaggaaagctgatgctaaagaaggtgcataaatttttcttttatcacacttaattttttctagttcattgtctaaaatctaatgccttggtgttgttact |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805475 |
aaggaaagctgatgctaaagaaggtgcataaatttttcttttatcacacttaattttttctagttcattgtctaaaatctaatgccttggtgttgttact |
44805376 |
T |
|
| Q |
426 |
ttttgc-nnnnnnnnnacagtttctgttagtcctattacaagtactgaagaaaaagaaaatatggtaagtggtttactatgataatgaattatagtttct |
524 |
Q |
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| T |
44805375 |
ttttgcttttttttttacagtttctgttagtcctattacaagtactgaagaaaaagaaaatatggtaagtggtttactatgataatgaattatagtttct |
44805276 |
T |
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| Q |
525 |
acagtgttgtaagagaatatatgtctgacatggtggttttgtccttataggatgttcggtccactgatgatg |
596 |
Q |
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| T |
44805275 |
acagtgttgtaagagaatatatgtctgacatggtggttttgt-cttataggatgttcggtccactgatgatg |
44805205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44805722 - 44805624
Alignment:
| Q |
1 |
aggaaactagccaaaagaaaaatctcactgcctctagtcaagtcacttctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaa |
99 |
Q |
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| T |
44805722 |
aggaaactagccaaaagaaaaatctcactgcctctagtcaagtcacttctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaa |
44805624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 21011336 - 21011229
Alignment:
| Q |
236 |
ttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaaagagtggggtcaagaaatatggaagg-aaagc |
334 |
Q |
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||||| ||||||||||||||||||||| || |||||||||| |||| | |||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
21011336 |
ttctgatagtttgaaccgtagtaggtctgtcaaaaagtcaggtaagctaggcaagcttgaaaccaataagagtggactcaagaaatatggaaggaaaagc |
21011237 |
T |
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| Q |
335 |
tgatgcta |
342 |
Q |
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|||||||| |
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| T |
21011236 |
tgatgcta |
21011229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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