View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1175_low_46 (Length: 201)

Name: NF1175_low_46
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1175_low_46
NF1175_low_46
[»] chr1 (1 HSPs)
chr1 (1-66)||(1661388-1661453)
[»] chr4 (1 HSPs)
chr4 (19-66)||(44047607-44047654)
[»] chr2 (3 HSPs)
chr2 (19-65)||(11412697-11412743)
chr2 (18-67)||(3866047-3866096)
chr2 (21-66)||(43752206-43752251)
[»] chr7 (2 HSPs)
chr7 (18-67)||(11593935-11593984)
chr7 (18-66)||(36136739-36136787)
[»] chr5 (1 HSPs)
chr5 (19-59)||(6859357-6859397)


Alignment Details
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1661388 - 1661453
Alignment:
Q  1 gtgatagaattagaaatgaatgacaatatttgagagagagttggggtagcagctatagtaaaaaag 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  1661388 gtgataggattagaaatgaatgacaatatttgagagagagttggggtagcacctatagtagaaaag 1661453  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 44047654 - 44047607
Alignment:
Q  19 aatgacaatatttgagagagagttggggtagcagctatagtaaaaaag 66  Q
    |||||||| ||| |||||||||||||||||||| |||||||| |||||    
T  44047654 aatgacaacattagagagagagttggggtagcacctatagtagaaaag 44047607  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 11412697 - 11412743
Alignment:
Q  19 aatgacaatatttgagagagagttggggtagcagctatagtaaaaaa 65  Q
    |||||||| ||| |||||||||||||||||||| |||||||| ||||    
T  11412697 aatgacaacattagagagagagttggggtagcacctatagtagaaaa 11412743  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3866047 - 3866096
Alignment:
Q  18 gaatgacaatatttgagagagagttggggtagcagctatagtaaaaaagt 67  Q
    ||||||||  ||| |||||||||| ||||||||| |||||||||||||||    
T  3866047 gaatgacaccattggagagagagtgggggtagcacctatagtaaaaaagt 3866096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 43752251 - 43752206
Alignment:
Q  21 tgacaatatttgagagagagttggggtagcagctatagtaaaaaag 66  Q
    |||| ||||| |||||||||||||||||||| |||||||| |||||    
T  43752251 tgaccatattagagagagagttggggtagcacctatagtagaaaag 43752206  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 11593935 - 11593984
Alignment:
Q  18 gaatgacaatatttgagagagagttggggtagcagctatagtaaaaaagt 67  Q
    ||||||||  |||||||||||||| ||||||||| |||||||| ||||||    
T  11593935 gaatgacaccatttgagagagagtgggggtagcacctatagtagaaaagt 11593984  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 36136739 - 36136787
Alignment:
Q  18 gaatgacaatatttgagagagagttggggtagcagctatagtaaaaaag 66  Q
    ||||||||  ||| |||||||||||||||||||| |||||||| |||||    
T  36136739 gaatgacaccattagagagagagttggggtagcacctatagtagaaaag 36136787  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6859357 - 6859397
Alignment:
Q  19 aatgacaatatttgagagagagttggggtagcagctatagt 59  Q
    |||||||||||| || ||||||||||||||||| |||||||    
T  6859357 aatgacaatattagacagagagttggggtagcacctatagt 6859397  T

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