View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_5 (Length: 560)
Name: NF1175_low_5
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 28 - 546
Target Start/End: Complemental strand, 3314371 - 3313839
Alignment:
| Q |
28 |
cactacatttatggaacccacaagttatgatctcaaattaagttactaaattattttgggaggccctcttagaagaaaaagaaaatagcaaacctacaac |
127 |
Q |
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| T |
3314371 |
cactacatttatggaacccacaagttatgatctcaaattaagttactaaattattttgggaggccctcttagaagaaaaagaaaatagcaaacctacaac |
3314272 |
T |
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| Q |
128 |
gtaaccaactaaattatttaacaaacaaataaacctttttctagggaacaccaaatttagatatttgttgtggggtcatgctaacgtccttggtcttcaa |
227 |
Q |
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| T |
3314271 |
gtaaccaactaaattatttaacaaacaaataaacctttttctagggaacaccaaatttagatatttgttgtagggtcatgctaacgtgcttggtcttcaa |
3314172 |
T |
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| Q |
228 |
acaaatataacaaaatgacaaaatatttgtcacaaacnnnnnnncattattgccttcatagaagaaaagatctatggacattatttagagcaagacttac |
327 |
Q |
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| T |
3314171 |
acaaatataacaaaatgacaaaatatttgtcacaaac-aaaaaacattattgccttcatagaagaaaagatctatggacattatttagagcaagacttac |
3314073 |
T |
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| Q |
328 |
agtatatgccttgggagtatcatatccaagaacaatatcacctaagtttcctgagacaaattaaaccatataatgta---------------tnnnnnnn |
412 |
Q |
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| T |
3314072 |
agtatatgccttgggagtatcatatccaagaacaatatcacctaagtttcctgagacaaattaaaccatataatgtataaaaaaaaaatatgtaaaaaaa |
3313973 |
T |
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| Q |
413 |
cataaatcaatgttttaaaaaagttgaacaaattaatggaagctacacttttaaccagttgaacaatctagttcgattcaattgtaataaagaatatata |
512 |
Q |
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| T |
3313972 |
cataaatcaatgttttaaaaaagttgaacaaattaatggaagctacacttttaaccatttgaacaatctagttcgattcaattgtaataaagaatatata |
3313873 |
T |
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| Q |
513 |
ctaatcaaacaatgaactaggtgtatttaccatt |
546 |
Q |
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| T |
3313872 |
ctaatcaaacaatgaactaggtgtatttaccatt |
3313839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 311 - 399
Target Start/End: Complemental strand, 3320902 - 3320814
Alignment:
| Q |
311 |
tttagagcaagacttacagtatatgccttgggagtatcatatccaagaacaatatcacctaagtttcctgagacaaattaaaccatata |
399 |
Q |
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| T |
3320902 |
tttagaacaagacttacagtatatgcctttggagtatcatatccaagaacaatatcacctaattttcctgagacaaattaaatcatata |
3320814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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