View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1175_low_7 (Length: 447)
Name: NF1175_low_7
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 41 - 437
Target Start/End: Complemental strand, 29008398 - 29008002
Alignment:
| Q |
41 |
tgagcctggtgaagaagaagttgaaggagaaactgcaggagagggtgttggtgattttgtggagggtgatggagctggtgctgaatttggtgataattgt |
140 |
Q |
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| T |
29008398 |
tgagcctggtgaagaagaagttgaaggagaaactgcaggagagggtgttggtgattttgtggagggtgatggagctggtgctgaatttggtgataattgt |
29008299 |
T |
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| Q |
141 |
gtgggtgctggtgcaggagcttgtgctaggcatgatgtagccaaaagtcccaatatcacaaacaatttgattgatgcaaaacccatgttgtatatgtttt |
240 |
Q |
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| T |
29008298 |
gtgggtgctggtgcaggagcttgtgctaggcatgatgtagccaaaagtcccaatatcacaaacaatttgattgatgcaaaacccatgttgtatatgtttt |
29008199 |
T |
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| Q |
241 |
ttgagagagaagaatgtttaattagaactaagaagtgagtaaaagatgaatattttttatgagaaggttaagatttctccaaatatatggtttgaaagat |
340 |
Q |
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| T |
29008198 |
ttgagagagaagaatgtttaattagaactaagaagtgagtaaaagatgaatattttttatgagaaggttaagatttctccaaatatatggtttgtaagat |
29008099 |
T |
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| Q |
341 |
gattaatgtgtgtaatattcaagtgcataagtggtgtatatatagttataaataatgggtaatggcttgtgtttttaattagccaggccggtctgtg |
437 |
Q |
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| T |
29008098 |
gattaatgtgtgtaatattcaagtgcataagtggtgtatatatagttataaataatgggtaatggcttgtgtttttaattagccaggccggtatgtg |
29008002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 44 - 267
Target Start/End: Complemental strand, 28996444 - 28996219
Alignment:
| Q |
44 |
gcctggtgaagaagaagttgaaggagaaactgcaggagagggtgttggtgattttgtggagggtgatggagctggtgctgaatttggtgataat---tgt |
140 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||| |
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| T |
28996444 |
gcctggagaagaagaggttgaaggagaaactgcaggagagggtgttggtgaccttgtggaggatgatggaactggtgctgaatttggtgataatgattgt |
28996345 |
T |
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| Q |
141 |
gtgggtgctggtgcaggagcttgtgctaggcatgatgtagccaaaagtcccaatatcacaaacaatttgattgatgcaaaacccatgttgtatatgtttt |
240 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
28996344 |
gtgggtgctggtgcaggagcttgtgctaggcatgaggtagccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatatttt |
28996245 |
T |
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| Q |
241 |
ttgagagagaagaatgtttaattagaa |
267 |
Q |
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||||||||||| |||| |||||||||| |
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| T |
28996244 |
ttgagagagaaaaatg-ttaattagaa |
28996219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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