View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1175_low_8 (Length: 445)
Name: NF1175_low_8
Description: NF1175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1175_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 11542169 - 11542504
Alignment:
| Q |
16 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542169 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
11542268 |
T |
|
| Q |
116 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542269 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
11542368 |
T |
|
| Q |
216 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11542369 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcttcatcaatgtcatgg |
11542468 |
T |
|
| Q |
316 |
agaacatatctcgtatcaggaacataacctgcttcc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542469 |
agaacatatctcgtatcaggaacataacctgcttcc |
11542504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 34614714 - 34615049
Alignment:
| Q |
16 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614714 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
34614813 |
T |
|
| Q |
116 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614814 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
34614913 |
T |
|
| Q |
216 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34614914 |
agtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatactgcaaagccttttccttttcctcctcatcaatgtcatgg |
34615013 |
T |
|
| Q |
316 |
agaacatatctcgtatcaggaacataacctgcttcc |
351 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34615014 |
agaacgtatctcgtatcaggaacataacctgcttcc |
34615049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 45 - 351
Target Start/End: Original strand, 34757289 - 34757595
Alignment:
| Q |
45 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757289 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
34757388 |
T |
|
| Q |
145 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34757389 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactgatgagac |
34757488 |
T |
|
| Q |
245 |
cataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaacataacc |
344 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34757489 |
cataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcctcatcaatgtcatggagaacgtatctcgtatcaggaacataacc |
34757588 |
T |
|
| Q |
345 |
tgcttcc |
351 |
Q |
| |
|
||||||| |
|
|
| T |
34757589 |
tgcttcc |
34757595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 85 - 351
Target Start/End: Original strand, 34742222 - 34742488
Alignment:
| Q |
85 |
cattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctc |
184 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34742222 |
cattttccatctttgaaatgatgaaatctcttgttgtccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctc |
34742321 |
T |
|
| Q |
185 |
cacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| |||| || |
|
|
| T |
34742322 |
cacatatacgtagattcttgataattctaagcatagtccttggcggagtactgatgagaccataagctattgccaaacgctcgctatgatatcgcaaggc |
34742421 |
T |
|
| Q |
285 |
cttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaacataacctgcttcc |
351 |
Q |
| |
|
|| || ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34742422 |
tttctccttttcctcctcatcaatatcatggagtacgtatctcgtatcaggaacataacctgcttcc |
34742488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 34757254 - 34757287
Alignment:
| Q |
20 |
aatctagcaatatatcatcagagtatctacattt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34757254 |
aatctagcaatatatcatcagagtatctacattt |
34757287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 341
Target Start/End: Original strand, 33778995 - 33779271
Alignment:
| Q |
65 |
accaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgatttt |
164 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || || ||||| || ||||| || |||||| | |||||||| || |
|
|
| T |
33778995 |
accagtaatccccacaagagcattttccatccttgaaatgatgaaaccttttgttatctctaacaatcagttccctccctacaatcctagacatgatctt |
33779094 |
T |
|
| Q |
165 |
gatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgt |
264 |
Q |
| |
|
||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || || |||||||| || |||||||| |||||||| | ||| |
|
|
| T |
33779095 |
gatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctaggaggagtactaataagaccataggcaattgctagacgc |
33779194 |
T |
|
| Q |
265 |
tcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaacata |
341 |
Q |
| |
|
||||| || || |||| |||| || ||| | |||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33779195 |
tcactgtggtagagcaaggcctgctcctttgcttcctgatcaatgtcatgaagaacatatcttgtatcaggaacata |
33779271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 17993032 - 17992990
Alignment:
| Q |
62 |
actaccaataatctccacaagagcattttccatctttgaaatg |
104 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17993032 |
actaccagtaatcaccacaagagcatttcccatctttgaaatg |
17992990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University