View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11760_high_12 (Length: 300)

Name: NF11760_high_12
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11760_high_12
NF11760_high_12
[»] chr3 (2 HSPs)
chr3 (262-300)||(51000492-51000530)
chr3 (1-33)||(29565102-29565134)
[»] chr8 (3 HSPs)
chr8 (1-34)||(9056136-9056169)
chr8 (1-34)||(24053589-24053622)
chr8 (1-33)||(1744225-1744257)
[»] chr7 (2 HSPs)
chr7 (1-34)||(8447709-8447742)
chr7 (1-34)||(28949390-28949423)
[»] chr6 (2 HSPs)
chr6 (1-34)||(30397839-30397872)
chr6 (1-33)||(8145941-8145973)
[»] chr4 (3 HSPs)
chr4 (1-34)||(56328565-56328598)
chr4 (2-34)||(3511701-3511733)
chr4 (1-37)||(21884007-21884043)
[»] chr1 (3 HSPs)
chr1 (1-34)||(33939289-33939322)
chr1 (1-33)||(4060286-4060318)
chr1 (1-37)||(29302180-29302216)
[»] scaffold0536 (1 HSPs)
scaffold0536 (1-33)||(3943-3975)
[»] chr5 (2 HSPs)
chr5 (2-34)||(13311167-13311199)
chr5 (1-33)||(27314468-27314500)


Alignment Details
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 51000492 - 51000530
Alignment:
Q  262 aaaatgaaattttaaaagatttaagaaacttatttaaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51000492 aaaatgaaattttaaaagatttaagaaacttatttaaaa 51000530  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29565134 - 29565102
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  29565134 tttttgcttatattagtgaccggagggtgtaca 29565102  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9056136 - 9056169
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9056136 tttttgcttatattagtgaccggagggtgtacat 9056169  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24053622 - 24053589
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24053622 tttttgcttatattagtgaccggagggtgtacat 24053589  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1744257 - 1744225
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1744257 tttttgcttatattagtgaccggagggtgtaca 1744225  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8447742 - 8447709
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8447742 tttttgcttatattagtgaccggagggtgtacat 8447709  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28949390 - 28949423
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  28949390 tttttgcttatattagtgaccggagggtgtacat 28949423  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30397839 - 30397872
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30397839 tttttgcttatattagtgaccggagggtgtacat 30397872  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8145973 - 8145941
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  8145973 tttttgcttatattagtgaccggagggtgtaca 8145941  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 56328565 - 56328598
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  56328565 tttttgcttatattagtgaccggagggtgtacat 56328598  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3511733 - 3511701
Alignment:
Q  2 ttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||| ||||||||||||||    
T  3511733 ttttgcttatattagtgatcggaaggtgtacat 3511701  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21884043 - 21884007
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacatcat 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  21884043 tttttgcttatattagtgaccggagggtgtatatcat 21884007  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33939322 - 33939289
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33939322 tttttgcttatattagtgaccggagggtgtacat 33939289  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4060286 - 4060318
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  4060286 tttttgcttatattagtgaccggagggtgtaca 4060318  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29302180 - 29302216
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtacatcat 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  29302180 tttttgcttatattagtgaccggagggtgtatatcat 29302216  T

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Target: scaffold0536 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3975 - 3943
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  3975 tttttgcttatattagtgaccggagggtgtaca 3943  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 13311199 - 13311167
Alignment:
Q  2 ttttgcttatattagtgaccggaaggtgtacat 34  Q
    ||||||||||||||||||||||| |||||||||    
T  13311199 ttttgcttatattagtgaccggagggtgtacat 13311167  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27314500 - 27314468
Alignment:
Q  1 tttttgcttatattagtgaccggaaggtgtaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  27314500 tttttgcttatattagtgaccggagggtgtaca 27314468  T

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