View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_high_5 (Length: 405)
Name: NF11760_high_5
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 35211652 - 35211317
Alignment:
| Q |
1 |
ctagcagttaagggagggttcc-aaagtgcttggatattcatcaaacaacagaacatgatataacatttcttctaccattctgttctcaaatgtacctat |
99 |
Q |
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| T |
35211652 |
ctagcagttaagggagggttcccaaagtgcttggatattcatcaaacaacagaacatgatataacatttcttctaccattctgttctcaaatgtacctat |
35211553 |
T |
|
| Q |
100 |
gtcattgaccagttaccctgatagctaacccaagagtgctctgggctttatgtttatcatatttatgtctaatagaacatacctatcttccctcggaaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35211552 |
gtcattgaccagttaccctgatagctaacccaagagtgctctgggctttatgtttatcatatttatgtctaatagaacatacctatcttccctcggaaag |
35211453 |
T |
|
| Q |
200 |
atgacattgacaatagatgagcagaaatattcactctgaatattcagtattagtgcctcttagtttaatgtttctttatgcagctaggttttttagctca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35211452 |
atgacattgacaatagatgagcagaaatattcactctgaatattcagtattagtgcctcttagtttaatgtttctttatgcagctaggttttttagctca |
35211353 |
T |
|
| Q |
300 |
taaattataaacaaagctattaatttaccatttctg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35211352 |
taaattataaacaaagctattaatttaccatttctg |
35211317 |
T |
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