View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11760_high_8 (Length: 364)

Name: NF11760_high_8
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11760_high_8
NF11760_high_8
[»] chr8 (8 HSPs)
chr8 (40-345)||(2273761-2274065)
chr8 (11-169)||(10248246-10248406)
chr8 (22-171)||(17656428-17656578)
chr8 (103-171)||(43312412-43312480)
chr8 (60-165)||(8862352-8862458)
chr8 (18-165)||(12197763-12197910)
chr8 (18-165)||(12442191-12442338)
chr8 (60-165)||(22325826-22325931)
[»] chr1 (11 HSPs)
chr1 (3-170)||(34775112-34775280)
chr1 (21-171)||(32882606-32882757)
chr1 (46-144)||(46768442-46768541)
chr1 (11-164)||(32863227-32863381)
chr1 (13-165)||(10785144-10785297)
chr1 (15-162)||(31290706-31290852)
chr1 (47-139)||(6582968-6583061)
chr1 (10-73)||(376486-376549)
chr1 (11-78)||(27102515-27102582)
chr1 (59-171)||(11439749-11439860)
chr1 (39-141)||(46603632-46603733)
[»] chr2 (15 HSPs)
chr2 (11-170)||(4974985-4975145)
chr2 (11-170)||(4992893-4993053)
chr2 (4-163)||(7696209-7696368)
chr2 (21-163)||(10173270-10173413)
chr2 (11-169)||(41113421-41113577)
chr2 (103-165)||(12343063-12343125)
chr2 (14-165)||(34230448-34230598)
chr2 (11-97)||(13337565-13337650)
chr2 (40-143)||(37770360-37770462)
chr2 (90-143)||(16952143-16952196)
chr2 (90-143)||(17022808-17022861)
chr2 (90-143)||(17060114-17060167)
chr2 (103-144)||(27879926-27879967)
chr2 (107-143)||(387442-387478)
chr2 (109-141)||(22884931-22884963)
[»] chr5 (11 HSPs)
chr5 (11-169)||(13953929-13954088)
chr5 (19-143)||(30097600-30097725)
chr5 (11-161)||(8297721-8297870)
chr5 (65-171)||(21398054-21398161)
chr5 (60-171)||(26045693-26045805)
chr5 (11-136)||(26405229-26405354)
chr5 (75-171)||(14302188-14302285)
chr5 (11-158)||(7682806-7682953)
chr5 (60-143)||(7195031-7195114)
chr5 (90-165)||(33109957-33110033)
chr5 (88-165)||(10174926-10175004)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-165)||(36953-37107)
[»] chr3 (12 HSPs)
chr3 (11-164)||(50518770-50518922)
chr3 (90-171)||(37123621-37123703)
chr3 (11-78)||(4171077-4171144)
chr3 (4-147)||(14194194-14194337)
chr3 (103-144)||(32010028-32010069)
chr3 (11-78)||(14893263-14893330)
chr3 (11-78)||(25648016-25648083)
chr3 (109-143)||(43012643-43012677)
chr3 (21-87)||(46358073-46358139)
chr3 (40-77)||(32010121-32010158)
chr3 (104-165)||(46358181-46358242)
chr3 (40-163)||(12086489-12086613)
[»] chr4 (14 HSPs)
chr4 (11-171)||(16832701-16832861)
chr4 (57-171)||(53823149-53823261)
chr4 (46-165)||(38636949-38637069)
chr4 (60-160)||(49747778-49747879)
chr4 (11-79)||(28967207-28967275)
chr4 (40-165)||(41117678-41117803)
chr4 (46-165)||(19311082-19311201)
chr4 (10-97)||(2061512-2061599)
chr4 (103-165)||(22810934-22810996)
chr4 (93-165)||(48098581-48098651)
chr4 (40-171)||(39420746-39420877)
chr4 (66-165)||(52009085-52009184)
chr4 (11-73)||(42719494-42719556)
chr4 (82-165)||(25753419-25753503)
[»] scaffold1384 (1 HSPs)
scaffold1384 (23-171)||(1344-1497)
[»] chr6 (2 HSPs)
chr6 (13-142)||(15120285-15120415)
chr6 (11-77)||(20701478-20701544)
[»] chr7 (11 HSPs)
chr7 (59-142)||(24324527-24324610)
chr7 (11-143)||(16828781-16828913)
chr7 (55-136)||(6492855-6492937)
chr7 (81-141)||(22567880-22567941)
chr7 (81-141)||(28534279-28534340)
chr7 (14-78)||(42532943-42533007)
chr7 (40-164)||(1321041-1321165)
chr7 (10-171)||(6716416-6716578)
chr7 (11-170)||(33719206-33719365)
chr7 (88-143)||(23983472-23983528)
chr7 (120-164)||(43235601-43235645)
[»] scaffold0063 (1 HSPs)
scaffold0063 (106-170)||(58369-58433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (103-165)||(19624-19686)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 345
Target Start/End: Original strand, 2273761 - 2274065
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacga 139  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||   | |||||||| |||||||||||| ||||||     |||||||||||||||||    
T  2273761 gtataaaagcggaacacctgaaaataaacaccctaaaaaatatcctggatgacaacacccaccaaatacacgtcacca-----aacagactccttcacga 2273855  T
Q  140 aaacgccaactgtaaaaacgatatcccacacccaccaaatgcaagaaattgaatgtatnnnnnnnn----ttgacctgaactccttgttggcataatgtg 235  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| ||||||    
T  2273856 aaacgccaaccgtaaaaacgatatcccacacccaccaaatgcaagaaattgaatgtataaaaaaaaaaaattgacctgaactccttgttggcacaatgtg 2273955  T
Q  236 taggcaagagcataagcaactttggtgagttttcctctgagtaataattgagttgttccttttggaatgctgttaataacagctgcaacagcaaggctac 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2273956 taggcaagagcataagcaactttggtgagttttcctctgagtaatacttgagttgttccttttggaatgctgttaataacagctgcaacagcaaggctac 2274055  T
Q  336 taccatctac 345  Q
    ||||||||||    
T  2274056 taccatctac 2274065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 10248246 - 10248406
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacc-tgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tac 108  Q
    |||||||||||||| || ||||||||   ||||| |||||||| ||| | |||| ||||||| ||||||| |||| | |||||||||| | ||||| |||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatac 10248345  T
Q  109 acatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 169  Q
    || |||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||||    
T  10248346 acgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccaca 10248406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 17656428 - 17656578
Alignment:
Q  22 atataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatct 120  Q
    |||||||| ||||||   ||||| || ||||| ||| |||||| |||||||||||||  |||| | |||||||||| ||||||| | ||| |||||||||    
T  17656428 atataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaac-acccttgaggacaacacccaccaaaattcacgtcaccatct 17656526  T
Q  121 aaaacagactccttcacg-aaaacgccaactgtaaaaacgatatcccacacc 171  Q
    |||||||||||||||| | |||||| | |||| ||||||||||||| |||||    
T  17656527 aaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacacc 17656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 43312412 - 43312480
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
    |||||||  |||||| ||||| ||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  43312412 aaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacacc 43312480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 8862352 - 8862458
Alignment:
Q  60 aaaataaacaccctaaaaaatacccctaaggacaacactcac-caaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 158  Q
    |||||||||||| ||||||| ||||| ||||||||||| |||  |||||||| |||||| ||||||| ||||| | ||||| |||  | | |||||||||    
T  8862352 aaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaaaaac 8862451  T
Q  159 gatatcc 165  Q
     ||||||    
T  8862452 aatatcc 8862458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 12197763 - 12197910
Alignment:
Q  18 gagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcac-caaatacacatcacc 116  Q
    ||||||| |||||||||||   || || |||||||| ||  ||||||||||||||||||| | ||| ||  ||||||||| |||  |||||||| |||||    
T  12197763 gagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcacc 12197861  T
Q  117 atctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    | ||| ||||||| |||||| ||| ||| | |||  |||||||||||||    
T  12197862 acctacaacagacgccttcatgaacacgaccactaaaaaaacgatatcc 12197910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 12442191 - 12442338
Alignment:
Q  18 gagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcac-caaatacacatcacc 116  Q
    ||||||| |||||||||||   || || |||||||| ||  ||||||||||||||||||| | ||| ||  ||||||||| |||  |||||||| |||||    
T  12442191 gagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcacc 12442289  T
Q  117 atctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    | ||| ||||||| |||||| ||| ||| | |||  |||||||||||||    
T  12442290 acctacaacagacgccttcatgaacacgaccactaaaaaaacgatatcc 12442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 22325826 - 22325931
Alignment:
Q  60 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 158  Q
    |||||||||| ||||||||  |||| ||| ||| |||| ||||||| || |  ||||||| ||||||||||||||| || |||||| | | |||||||||    
T  22325826 aaaataaacatcctaaaaac-acccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaac 22325924  T
Q  159 gatatcc 165  Q
    |||||||    
T  22325925 gatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 34775280 - 34775112
Alignment:
Q  3 aagaccaatgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc 102  Q
    |||||| || || ||||||||| ||||||||||| | ||||| |||||||| ||| ||||||||||||| |||||||||||  | |||||||||| ||||    
T  34775280 aagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccacc 34775181  T
Q  103 aaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 170  Q
    ||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  34775180 aaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacac 34775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 32882757 - 32882606
Alignment:
Q  21 aatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatc 119  Q
    |||| ||||||||||| | ||||| |||| ||| ||| ||||||||||||||||||| | |||||  |||||||||| |||| ||||| ||||||||  |    
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcc 32882658  T
Q  120 taaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
    |||||| ||||||||||||||||||   |||||||| ||||||||| |||||    
T  32882657 taaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacacc 32882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 46768541 - 46768442
Alignment:
Q  46 aggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacg 144  Q
    |||||||| ||| ||||||||||||||||||||| |||||  |||||||||| |||| |||| ||| |||||| ||||||||||||||||||||||||||    
T  46768541 aggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacg 46768442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 32863227 - 32863381
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaa-ataca 109  Q
    ||||| |||||||| |||||||| |    ||||| |||||||| |||||||||||||||||   ||||| ||||   |||||||||| |||||| |||||    
T  32863227 tgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacataca 32863326  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 164  Q
    | |||||  |||||||||| |||| |||||||||| | | |||||| ||||||||    
T  32863327 cgtcaccgcctaaaacagaatcctccacgaaaacgaccattgtaaacacgatatc 32863381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 10785144 - 10785297
Alignment:
Q  13 aaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacaca 111  Q
    |||||||||||| ||||||||  | | ||| |||| ||||| |||  || ||||||||| ||||||| |||| | |||||||||| || |||| ||||      
T  10785144 aaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatg 10785243  T
Q  112 tcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    | | ||  ||||||||||||||||||||||||| || ||| |||||||||||||    
T  10785244 ttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatcc 10785297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 31290706 - 31290852
Alignment:
Q  15 actgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatca 114  Q
    |||||||||| |||| | |||| || |||  || ||||| ||| ||||||||||||| ||||||  |||||| |||||||  | |  || ||||||||||    
T  31290706 actgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaacaccataaaaac-acccctgaggacaattcccttcatatacacatca 31290804  T
Q  115 ccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgata 162  Q
    ||| ||||| ||||||||||| |||||||| | |||||||||| ||||    
T  31290805 ccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgata 31290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 6582968 - 6583061
Alignment:
Q  47 ggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacga 139  Q
    ||||||| ||| ||||||||||||| ||||||| || | | | || ||||| ||||||| ||||| |||||| ||||||||||||||| |||||    
T  6582968 ggcggaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcctacacga 6583061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 376486 - 376549
Alignment:
Q  10 atgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccct 73  Q
    ||||||| ||||||| ||| ||||||| | ||||| |||| ||| |||||||||||||||||||    
T  376486 atgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 27102582 - 27102515
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaa 78  Q
    |||| ||||||||| |||| |||||  | ||||| |||||||| ||| ||||||||||||||||||||    
T  27102582 tgaacctgagaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaa 27102515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 11439749 - 11439860
Alignment:
Q  59 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 157  Q
    |||||||||||||||||||  | ||||| | |||||||  ||||||| ||||| |||||| ||||||||||  ||||||||||| |  | || |||||||    
T  11439749 gaaaataaacaccctaaaa--tccccctgaagacaacatccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaa 11439846  T
Q  158 cgatatcccacacc 171  Q
     ||||||| |||||    
T  11439847 tgatatccaacacc 11439860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 46603733 - 46603632
Alignment:
Q  39 tgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacg 138  Q
    |||||| |||||||| ||| ||||||||| ||   | |||| |||||| | |||||||| |||||||   | |||||||||||||||||||| |||||||    
T  46603733 tgtatataggcggaacacccgaaaataaa-acatcataaaagacccctgaagacaacacccaccaaaataaaatcaccatctaaaacagacttcttcacg 46603635  T
Q  139 aaa 141  Q
    |||    
T  46603634 aaa 46603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 4975145 - 4974985
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaat-aca 109  Q
    ||||||| |||||| |||||||||||   ||||| |||| ||| ||| ||||||||||||||| ||||| | || | |||| ||||| |||||||| |||    
T  4975145 tgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattaca 4975046  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 170  Q
    || ||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  4975045 caccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4974985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 4993053 - 4992893
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaat-aca 109  Q
    ||||||| |||||| |||||||||||   ||||| |||| ||| ||| ||||||||||||||| ||||| | || | |||| ||||| |||||||| |||    
T  4993053 tgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattaca 4992954  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 170  Q
    || ||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  4992953 caccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4992893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 7696368 - 7696209
Alignment:
Q  4 agaccaatgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacca 103  Q
    ||||| |||||| |||||||| |||| |||||  | ||||| |||||||| |||  |||||||||||| ||||||  |||||  |||||||||| |||||    
T  7696368 agaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaaac-acccccgaggacaacacccacca 7696270  T
Q  104 aa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatat 163  Q
    || |||||||||||| |||||| | ||||||||||||||||| | | |||||||| |||||    
T  7696269 aaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatat 7696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 10173270 - 10173413
Alignment:
Q  21 aatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactca-ccaaatacacatcaccatc 119  Q
    |||| |||||||| ||  |||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||| || || | |||||||  ||||   |    
T  10173270 aatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcc 10173369  T
Q  120 taaaacagactccttcacgaaaacgccaactgtaaaaacgatat 163  Q
    ||||||||||  ||||| ||||||| | ||||||||||||||||    
T  10173370 taaaacagacgtcttcatgaaaacgactactgtaaaaacgatat 10173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 41113421 - 41113577
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-taca 109  Q
    |||||||||||||| ||||||||| |  |||||| |||||||| | | ||||||||| ||||||||||| |||| | ||| || |   ||||||| || |    
T  41113421 tgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaaacacccatgagggcacc---caccaaaataaa 41113517  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 169  Q
    | | || | |||||||||||||||||||||||||| | | |||| |||||||||||||||    
T  41113518 cgttactacctaaaacagactccttcacgaaaacgactattgtacaaacgatatcccaca 41113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 12343125 - 12343063
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    |||||||| |||||| |||||||||||||||||||||||||| |  |||||||||||||||||    
T  12343125 aaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc 12343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 34230598 - 34230448
Alignment:
Q  14 aactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacat 112  Q
    ||||| ||||| |||| |||| | | ||||| |||||||| |||  |||||||||| | ||||||  |||||| || ||||||  ||||||| ||||| |    
T  34230598 aactgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaac-accccttagaacaacatccaccaaaatacacgt 34230500  T
Q  113 caccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    ||||||||||| ||||||| | |||||||||| | ||| ||||||||||||||    
T  34230499 caccatctaaa-cagactcttccacgaaaacgaccactataaaaacgatatcc 34230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 13337650 - 13337565
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacac 97  Q
    |||||| ||||||| |||| ||||||   ||||| ||| |||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  13337650 tgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacacccta-aaaacacccctgaggacaacac 13337565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 37770360 - 37770462
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacg 138  Q
    ||||| |||||||| ||| ||||||||||||||||||||    || | |||| | ||| ||||||| | ||| |||||| ||||||||||||||||||||    
T  37770360 gtatataggcggaacacccgaaaataaacaccctaaaaaca--ccatgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcacg 37770457  T
Q  139 aaaac 143  Q
    |||||    
T  37770458 aaaac 37770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 16952143 - 16952196
Alignment:
Q  90 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 143  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  16952143 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 16952196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 17022808 - 17022861
Alignment:
Q  90 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 143  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17022808 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17022861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 17060114 - 17060167
Alignment:
Q  90 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 143  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17060114 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17060167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 27879926 - 27879967
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacg 144  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  27879926 aaataaacatcaccacctaaaacagactccttcaggaaaacg 27879967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 387478 - 387442
Alignment:
Q  107 acacatcaccatctaaaacagactccttcacgaaaac 143  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  387478 acacatcaccacctaaaacagactccttcacaaaaac 387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 22884931 - 22884963
Alignment:
Q  109 acatcaccatctaaaacagactccttcacgaaa 141  Q
    ||||||||| |||||||||||||||||||||||    
T  22884931 acatcaccacctaaaacagactccttcacgaaa 22884963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 13953929 - 13954088
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaataca 109  Q
    ||||||||||| || ||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||| | |||||||| | |||| |||||||    
T  13953929 tgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaataca 13954028  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 169  Q
      ||| |  ||||||||||||  |||| ||| ||| | ||||||||||| ||||||||||    
T  13954029 tgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaacaatatcccaca 13954088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 30097725 - 30097600
Alignment:
Q  19 agaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcacca 117  Q
    |||||| ||||||||| | | ||||| |||||||| ||| ||||||||||||||||||||| | || | | |||||||| |||| |||||||| ||||||    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcacca 30097626  T
Q  118 tctaaaacagactccttcacgaaaac 143  Q
     |||||||||||||||||||||||||    
T  30097625 cctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 8297870 - 8297721
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-taca 109  Q
    |||||||||||||| |||  ||||||  |||| | |||||||| ||||||||||| ||||||||||||  |||||| |||| ||||  ||||||| ||||    
T  8297870 tgaaactgagaatacaaaa-aaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaac-acccctgaggataacatccaccaaaataca 8297773  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgat 161  Q
    |||||||| |||||||| ||||||||| ||||| | | | ||||||||||||    
T  8297772 catcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgat 8297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 21398054 - 21398161
Alignment:
Q  65 aaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatat 163  Q
    ||||||| ||||||| |||||| ||||||||||| || ||| ||||| |||||||||||||||||| |||||||||||||  |   ||||||||||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  164 cccacacc 171  Q
    ||| ||||    
T  21398154 cccgcacc 21398161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 26045693 - 26045805
Alignment:
Q  60 aaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 158  Q
    ||||||||||||||||||||  ||||| |||||||||| |||| |||| ||| |||||| |||||||||||| ||||| ||||| | | || ||||||||    
T  26045693 aaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaac 26045792  T
Q  159 gatatcccacacc 171  Q
    || |||| |||||    
T  26045793 gaaatccaacacc 26045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 26405229 - 26405354
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaataca 109  Q
    |||||||||||||| |||| ||||||   ||||| || ||||| ||| ||||||||||| ||| ||||| |||||| |||||||||  |||| |||||||    
T  26405229 tgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaaca-ccttaaaaacacccctgaggacaacaaccaccaaaataca 26405327  T
Q  110 catcaccatctaaaacagactccttca 136  Q
    | |||||| |||||||||||| |||||    
T  26405328 cgtcaccacctaaaacagacttcttca 26405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 14302188 - 14302285
Alignment:
Q  75 aaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
    ||||| |||||| | |||||||| ||||||| ||||| |||||| |||||||||| |||||| |||||||| | | |||||||||||||||| |||||    
T  14302188 aaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacacc 14302285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 7682953 - 7682806
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-taca 109  Q
    |||||||||||||| ||| |||||||   ||||| |||||||| | | |||||||| ||||| |||||||||   | || ||||||| ||||||| ||||    
T  7682953 tgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcaccc-aaaaaatacttatgagaacaacacccaccaaaataca 7682855  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 158  Q
    |||||||| |||||| |||||| ||||| |||||| | || ||||||||    
T  7682854 catcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 7195031 - 7195114
Alignment:
Q  60 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 143  Q
    |||||||||||||||||||  ||| ||  ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| |||||    
T  7195031 aaaataaacaccctaaaaac-accgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 33109957 - 33110033
Alignment:
Q  90 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    |||||||| ||||||| ||||| ||| || |||||||| || |||||||||||||| | ||||||||||||||||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatcc 33110033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 10175004 - 10174926
Alignment:
Q  88 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    |||||||||| ||||||| ||||| | |||| |||||||||||||||||   |||||| | || |||||||||||||||    
T  10175004 aggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatcc 10174926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 37107 - 36953
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-taca 109  Q
    ||||||||| |||| |||| |||| | ||||||| |||||||| | | ||||||||||||| ||||||| |||| | ||||| |||| || |||| ||||    
T  37107 tgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaataca 37008  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    | |||||| ||||||||||||||||||||||| | || ||||||||||||| ||||    
T  37007 cgtcaccacctaaaacagactccttcacgaaaccacc-actgtaaaaacgacatcc 36953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 50518770 - 50518922
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-taca 109  Q
    |||||||||||||| |||| |||||    ||||| |||||||| ||| ||||||||||||||||||||  |||| | ||||| |||| || |||| ||||    
T  50518770 tgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaac-acccatgaggaccacacccaacaaaataca 50518868  T
Q  110 catcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 164  Q
    | |||||||||||||||||||||||||||| | | || |||||||||||||||||    
T  50518869 cctcaccatctaaaacagactccttcacgataccacc-actgtaaaaacgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 37123703 - 37123621
Alignment:
Q  90 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||| |||||    
T  37123703 gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 37123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 4171144 - 4171077
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaa 78  Q
    |||||||||||||| |||| ||||||   ||||| |||||||| ||||||||||||||||||||||||    
T  4171144 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 4171077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 14194337 - 14194194
Alignment:
Q  4 agaccaatgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacca 103  Q
    |||||| |||||||||||| | |||| |||||  |  |||| |||||||| | | ||||||||||| ||||||||  || | | ||||| |||| |||||    
T  14194337 agaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaac-actcatgaggaccacacccacca 14194239  T
Q  104 aa-tacacatcaccatctaaaacagactccttcacgaaaacgcca 147  Q
    || ||||| |||||| |||||||||||||| |||||||| |||||    
T  14194238 aaatacacgtcaccacctaaaacagactccatcacgaaatcgcca 14194194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 32010069 - 32010028
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacg 144  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  32010069 aaataaacatcaccacctaaaacagactccttcacgaaaacg 32010028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 14893330 - 14893263
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaa 78  Q
    |||||| |||| || |||| |||| | | ||||| |||||||| ||||||||||||||||||||||||    
T  14893330 tgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaa 14893263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 25648083 - 25648016
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaa 78  Q
    ||||||| |||||| |||| |||||| | ||||| || ||||| ||| ||||||||||||||||||||    
T  25648083 tgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaa 25648016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 43012677 - 43012643
Alignment:
Q  109 acatcaccatctaaaacagactccttcacgaaaac 143  Q
    ||||||||||||||||||||||||||||| |||||    
T  43012677 acatcaccatctaaaacagactccttcacaaaaac 43012643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 46358073 - 46358139
Alignment:
Q  21 aatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaataccccta 87  Q
    |||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| | |||||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaagacaccccta 46358139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 32010158 - 32010121
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaa 77  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  32010158 gtatataggcggaatacctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 46358181 - 46358242
Alignment:
Q  104 aatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    |||| |||||| || |||||||||||||||||||||||||| ||  || |||||||| ||||    
T  46358181 aataaacatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatcc 46358242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 12086613 - 12086489
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacg 138  Q
    |||||||||||||| |   ||||||||||| | ||||| |||||||  | ||| |||| |||| ||||| ||||||||| ||||||||||    |||| |    
T  12086613 gtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattcaag 12086514  T
Q  139 aaaacgccaactgtaaaaacgatat 163  Q
    ||||||   ||||||||||||||||    
T  12086513 aaaacgatcactgtaaaaacgatat 12086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 16832701 - 16832861
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacac 110  Q
    |||||||||||||| |||| |||||| ||| ||| |||||||| |||  ||||||||||||||||||| | | ||| |||||||||| ||||||||| ||    
T  16832701 tgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaact-ctcctgaggacaacacccaccaaataaac 16832799  T
Q  111 atcaccatctaaaacagactccttcacg-aaaacgccaactgtaaaaacgatatcccacacc 171  Q
     |||||| |||||||| | |||| |||| |||||| |  ||||||||| ||||||| |||||    
T  16832800 gtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacacc 16832861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 53823149 - 53823261
Alignment:
Q  57 ctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaa 155  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||| ||| || |   ||||||||||||||| |||| | | ||  ||||    
T  53823149 ctgaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaatgtccaccataaa 53823245  T
Q  156 aacgatatcccacacc 171  Q
    ||||||||||||||||    
T  53823246 aacgatatcccacacc 53823261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 38636949 - 38637069
Alignment:
Q  46 aggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcac-caaatacacatcaccatctaaaacagactccttcacgaaaacg 144  Q
    |||||||| ||||||||||||||||| |||| || |||||  |||||||||| |||  |||||||  |||||| |||||||| ||||||||||||||||     
T  38636949 aggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaaca 38637048  T
Q  145 ccaactgtaaaaacgatatcc 165  Q
     |  ||||||||| |||||||    
T  38637049 accgctgtaaaaatgatatcc 38637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 49747879 - 49747778
Alignment:
Q  60 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 158  Q
    |||||||||||| ||||||| ||| || |||||||||| ||||||| | ||  |||||| ||||||||||||| |||||||||||| | | |||||||||    
T  49747879 aaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaac 49747780  T
Q  159 ga 160  Q
    ||    
T  49747779 ga 49747778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 28967275 - 28967207
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaa 79  Q
    |||||| || |||| |||| |||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  28967275 tgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaaa 28967207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 41117678 - 41117803
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacg 138  Q
    ||||| |||||||| ||| |||||||||||||||||| || | || | |||||||||| |||| ||||||| ||||||| ||| ||||||||| | ||||    
T  41117678 gtatataggcggaacacccgaaaataaacaccctaaataaca-ccatgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacg 41117776  T
Q  139 aaaacgccaactgtaaaaacgatatcc 165  Q
    |||||  |   ||||||||||||||||    
T  41117777 aaaacaaccgttgtaaaaacgatatcc 41117803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 19311082 - 19311201
Alignment:
Q  46 aggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacg 144  Q
    |||||||| | | |||| ||||||||||||||| | |||||  ||| ||||| ||||||| ||||| |||||| |  ||||||| |||||||||||||||    
T  19311082 aggcggaacatccgaaattaaacaccctaaaaact-cccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacg 19311180  T
Q  145 ccaactgtaaaaacgatatcc 165  Q
       ||||||||||||||||||    
T  19311181 agcactgtaaaaacgatatcc 19311201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 2061512 - 2061599
Alignment:
Q  10 atgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacac 97  Q
    ||||||||||||||| |||| | |||   |||||| |||||||| | |||| ||||||||| ||||||||||||||| ||| ||||||    
T  2061512 atgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgataataaacacactaaaaaatacccctgagggcaacac 2061599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 22810934 - 22810996
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    |||||||| |||||  |||||||||||| |||||||||| || | ||||||||||||||||||    
T  22810934 aaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc 22810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 48098651 - 48098581
Alignment:
Q  93 aacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    ||||| |||||||||||| |||||| ||||||||  ||| ||||| |||||| | ||||||||||||||||||    
T  48098651 aacacccaccaaatacacgtcaccacctaaaaca--ctctttcacaaaaacgaccactgtaaaaacgatatcc 48098581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 39420746 - 39420877
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacg 138  Q
    ||||| |||||||| ||| |||||| |||||| ||||||| || | | || | ||||| ||||||| ||||| |||||||||||||| ||||||| ||||    
T  39420746 gtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacac-caccaaaatacacgtcaccatctaaaactgactcctacacg 39420844  T
Q  139 aaaacgccaactgtaaaaacgatatcccacacc 171  Q
    | |||  | || ||| ||||||||||| |||||    
T  39420845 agaacaaccaccgtataaacgatatccaacacc 39420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 52009184 - 52009085
Alignment:
Q  66 aacaccctaaaaaatacccctaaggacaacactcaccaaata-cacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 164  Q
    |||||||||||||| |||||| |||||||| | ||||||| | |||  ||||| |||||||||||||| ||| | || || | |||||||||||||||||    
T  52009184 aacaccctaaaaaacacccctgaggacaaccc-caccaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaaacgatatc 52009086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 42719556 - 42719494
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccct 73  Q
    |||||||||||||| |||| |||| | | ||||| | |||||| |||||||||||||||||||    
T  42719556 tgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 25753503 - 25753419
Alignment:
Q  82 cccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    ||||| |||||||||| ||||||| ||||  ||| || |||||||| ||||||||||||||| | | ||||||||| || |||||    
T  25753503 cccctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatcc 25753419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 1344 - 1497
Alignment:
Q  23 tataaactaaaggctctgtataaaggcggaatacctgaaaa-taaacaccctaaaaaatacccctaaggacaaca---ctcaccaaa-tacacatcacca 117  Q
    ||||||| |||||| | ||||| |||| ||| ||| ||||| |||||||| ||||||| ||||||||||||||||   | ||| ||| ||||| ||||||    
T  1344 tataaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcacca 1443  T
Q  118 tctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
     ||||||| ||||||| ||||| |||  | |||||||||||||||||| |||||    
T  1444 cctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacacc 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 15120285 - 15120415
Alignment:
Q  13 aaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacaca 111  Q
    |||||||||||| ||||||||| |   ||||  |||| ||| | |||| |||||||||||||||||| | || | |||||||||  ||||||| ||||||    
T  15120285 aaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacaca 15120384  T
Q  112 tcaccatctaaaacagactccttcacgaaaa 142  Q
    |||||| ||||||||||||| ||||| ||||    
T  15120385 tcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 20701478 - 20701544
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaa 77  Q
    |||||||||||||| |||| |||||| ||||||| |||||||| ||||| |||||||||| ||||||    
T  20701478 tgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctggaaataaacacactaaaa 20701544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 24324527 - 24324610
Alignment:
Q  59 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaa 142  Q
    |||||||||||| |||||||  |||| | |||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  24324527 gaaaataaacactctaaaaac-acccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaa 24324610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 16828781 - 16828913
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaataca 109  Q
    |||||||||||||| |||| ||| || | ||||| |||||||| ||| ||||||||||| ||| | |||||||||| | || ||||  |||| |||||||    
T  16828781 tgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcct-agaaatacccctgaagaaaacaaccaccaaaataca 16828879  T
Q  110 catcaccatctaaaacagactccttcacgaaaac 143  Q
    ||||| |||||||||| | | |||||| ||||||    
T  16828880 catcatcatctaaaactggccccttcaagaaaac 16828913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 6492855 - 6492937
Alignment:
Q  55 acctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttca 136  Q
    ||||||||||||||||| ||||||| |||  | |||||||||  |||| |||| ||| |||||| ||||||||||||||||||    
T  6492855 acctgaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactccttca 6492937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 22567880 - 22567941
Alignment:
Q  81 acccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaa 141  Q
    ||||||| ||||||||  ||||||| |||||||||||| ||||||||||||| |||||||||    
T  22567880 acccctagggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacgaaa 22567941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 28534279 - 28534340
Alignment:
Q  81 acccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaa 141  Q
    |||||| |||||||||| ||||||| || ||||||||| ||||||||||||| |||||||||    
T  28534279 acccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaa 28534340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42532943 - 42533007
Alignment:
Q  14 aactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaa 78  Q
    ||||||||||| || | |||||| | ||||| |||||||| ||||| ||||||||||||||||||    
T  42532943 aactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaa 42533007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 1321165 - 1321041
Alignment:
Q  40 gtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactcc-ttcac 137  Q
    ||||| ||||||||  || ||||||||||||||||||||   ||| | | |||| ||  ||||||| |||||||||||| ||||||||||| || |||||    
T  1321165 gtatataggcggaactcccgaaaataaacaccctaaaaac--cccttgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctttcac 1321068  T
Q  138 gaaaacgccaactgtaaaaacgatatc 164  Q
    |||| |  | |||||||||||||||||    
T  1321067 gaaagcaaccactgtaaaaacgatatc 1321041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 6716416 - 6716578
Alignment:
Q  10 atgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaataccccta--aggacaacactca-ccaaat 106  Q
    ||||||| ||||||| ||| ||||||  | ||||| |  ||||| ||||||||||||||||||||||||| || |  |  |||| |||||  | |||| |    
T  6716416 atgaaacagagaatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagt 6716515  T
Q  107 acacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 171  Q
    |||   ||||| |||||||  ||||||||||||||||| | |||||||||||| |||| ||||||    
T  6716516 acatgacaccacctaaaac--actccttcacgaaaacgaccactgtaaaaacggtatctcacacc 6716578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 33719365 - 33719206
Alignment:
Q  11 tgaaactgagaatataaactaaaggctctgtataaaggcggaatacctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaataca 109  Q
    |||||||||||||| |||| || ||| ||| ||| |||||||| | | |||| |||||||||| ||||| || | | |||||||||| |||| ||||||     
T  33719365 tgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaagtaaacaccct-aaaaacactcatgaggacaacacccaccaaaatacc 33719268  T
Q  110 catcaccatctaaaacagactccttcac-gaaaacgccaactgtaaaaacgatatcccacac 170  Q
     ||||||  ||||||| |||||||||||  |||||| |  ||||||||| ||||||| ||||    
T  33719267 tatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacac 33719206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 23983528 - 23983472
Alignment:
Q  88 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 143  Q
    |||||||||| ||||||| || ||| ||||| ||||||||||||| |||||||||||    
T  23983528 aggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaac 23983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 43235645 - 43235601
Alignment:
Q  120 taaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 164  Q
    |||||||||||| |||||||||||| | || ||||||||||||||    
T  43235645 taaaacagactcattcacgaaaacggccaccgtaaaaacgatatc 43235601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 58433 - 58369
Alignment:
Q  106 tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 170  Q
    |||||||||||| | |||||||||||||||||||||||| | | |||||||  ||||||| ||||    
T  58433 tacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacac 58369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 19686 - 19624
Alignment:
Q  103 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 165  Q
    ||||||||||||||| |||||||| |||||||| | |||||| |  || ||||||||||||||    
T  19686 aaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatcc 19624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University