View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_1 (Length: 930)
Name: NF11760_low_1
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_1 |
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| [»] scaffold0048 (7 HSPs) |
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| [»] scaffold0185 (3 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 381; Significance: 0; HSPs: 7)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 131 - 679
Target Start/End: Complemental strand, 85098 - 84543
Alignment:
| Q |
131 |
agaaacagtttcacatttatctcctttgcctttccttcaaattggatttcctgcagttacagcatgtaacaggacaatgtaacagatctaagcagttcaa |
230 |
Q |
| |
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||||||| ||||||| ||||| |||||||||||||||| ||||||||||| |||||||||| || ||||||||| | ||| ||| ||||||| || || |
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| T |
85098 |
agaaacaatttcacaattatcccctttgcctttccttcgaattggatttcatgcagttacaacaagtaacaggatactgtcacaaatctaagaggtcaaa |
84999 |
T |
|
| Q |
231 |
tcttaaatcagcggatgagattgtgttaccgtatgaaaatgagcttgaaatgtaaa----cgtccaatctcaaaccagcgatcttgatccggtacacaga |
326 |
Q |
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|||||||| |||||||||||||| |||| | | |||||||||||||||||||| | |||||||||||| || || |||||||||||| |||||| |
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| T |
84998 |
tcttaaattggcggatgagattgttttactgcagaaaaatgagcttgaaatgtaattaatcatccaatctcaaatcaacggtcttgatccggttcacaga |
84899 |
T |
|
| Q |
327 |
aaaaccgtgtggaaatgctacagca---aacagggagaatttacatgatggagtttgtaaattgctttctgacacaagatttattatctaacaaatgctt |
423 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
84898 |
aaaaccgtgtggaaatgctacagcagcaaacagggagaatttatatgatggagtttgtaaattgctttctgacacaagatttattatctaacaaatgctt |
84799 |
T |
|
| Q |
424 |
gtagaaaaagttgttgtttagaaaatttacttcacaaagaattttcattacaagggtattaatatctgtgtctaaaaaatgatttttgagccaaaaaagt |
523 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
84798 |
gtagaaaaagttgttgtatagaaaatttacttcacaaagaattttcattacaagggtattaatacctgtgtctaaaaaatgatttttgagccaaaaaagt |
84699 |
T |
|
| Q |
524 |
cgttagcgatcaatgctttaatatattatgggttttagtgcttgtttcaaagggatgatcacacattagaagtaaagtgaagcgagtaaataagaatggg |
623 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
84698 |
ctttagcgatcaatgctttaatatattatgggttttagtgcttttttcaaagggatgatcacacatttgaagtaaagtgaagcgagtaaataagaatggg |
84599 |
T |
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| Q |
624 |
agcttagtgcttttttctatttttcaaaaaagaaagggcttctctcaataaaaaga |
679 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
84598 |
agcttagtgattttttctatttttcaaaaaagaaagggcttctcccaataaaaaga |
84543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 671 - 920
Target Start/End: Complemental strand, 84521 - 84271
Alignment:
| Q |
671 |
ataaaaagaaagggaaattcttcggtcc-gattcaccttttcagtaggacgatctgatcaaataaaaaactgccacatggttttgttgttgtagaaataa |
769 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
84521 |
ataaaaagaaagggaaattcttcggtcccgattcaccttttcagtaggacgatttgatcaaataaaaaactgccacgtggttttgttgttgtagaaataa |
84422 |
T |
|
| Q |
770 |
gttatgtttagagctccttcgtcgttcataaagatactttatcgtttttctttctccgttaatgaacgaatttgttattttttcagttttgtacatcata |
869 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
84421 |
gttatgtttagggctccttcgtcgttcataaagatactttatcgtttttctttctccgttaatgaacgaatttgttattttttcagttttgtacatcata |
84322 |
T |
|
| Q |
870 |
ctcatttatgatagaagattggatgcatagaaagtaagatttgatgtccat |
920 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
84321 |
ctcatttatgatagaagattggatgcatagaaagtaagatttaatgtccat |
84271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 131 - 351
Target Start/End: Original strand, 48102 - 48323
Alignment:
| Q |
131 |
agaaacagtttcacatttatctcctttgcctttccttcaaattggatttcctgcagttacagcatgtaacaggacaatgtaacagatctaagcagttcaa |
230 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
48102 |
agaaacagtttcacatttatcccctttgcctttccttcgaattggatttcctacagttacagcatgtaacaggacactgtaacagatctaagcagtcaaa |
48201 |
T |
|
| Q |
231 |
tcttaaatcagcggatgagattgtgttaccgtatgaaaatgagcttgaaatgtaaacgtccaatctcaaaccagcgatcttgatccggtacacaga-aaa |
329 |
Q |
| |
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| |||||| |||||| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||| || | |||||||| |||||||| | || |
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| T |
48202 |
tattaaattggcggataagattgttttaccgaatgaaaatgagtttgaaatgtaaacgtctgatctcaaatcaacagtcttgatctggtacacacattaa |
48301 |
T |
|
| Q |
330 |
accgtgtggaaatgctacagca |
351 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
48302 |
accatgtggaaatgctacagca |
48323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 60734 - 60863
Alignment:
| Q |
131 |
agaaacagtttcacatttatctcctttgcctttccttcaaattggatttcctgcagttacagcatgtaacaggacaatgtaacagatctaagcagttcaa |
230 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
60734 |
agaaacagtttcacatttatcccctttgcctttccttcaaattggatttcctgcagttacagcatgtaacaagacactgtaacagatctaagcagtcaaa |
60833 |
T |
|
| Q |
231 |
tcttaaatcagcggatgagattgtgttacc |
260 |
Q |
| |
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| |||||| ||||||| |||||| ||||| |
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| T |
60834 |
tattaaattggcggatgtgattgttttacc |
60863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 60586 - 60685
Alignment:
| Q |
18 |
aagatgttgctatatggcccaaaatacatggatgtatagaaagtgaagtaccataatgagcattattttggacatcccgaacaaagctttattagccaca |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
60586 |
aagatgttgctatatggcgcaaaatacatggatgtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctttatgagccaca |
60685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 60866 - 60977
Alignment:
| Q |
241 |
gcggatgagattgtgttaccgtatgaaaatgagcttgaaatgtaaacgtccaatctcaaaccagcgatcttgatccggtacacaga-aaaaccgtgtgga |
339 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||| || | ||||||||||| ||| | |||||||||||| |
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| T |
60866 |
gcggatgagattgttttacctaatgaaaatgagtttgaaatgtaaacgtctgatctcaaatcaatagttttgatccggtaaacacattaaaccgtgtgga |
60965 |
T |
|
| Q |
340 |
aatgctacagca |
351 |
Q |
| |
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|||||| ||||| |
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| T |
60966 |
aatgctgcagca |
60977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 48026 - 48064
Alignment:
| Q |
51 |
gtatagaaagtgaagtaccataatgagcattattttgga |
89 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |
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| T |
48026 |
gtatagaaagtgaagtaccataacgaggattattttgga |
48064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 7287 - 7371
Alignment:
| Q |
51 |
gtatagaaagtgaagtaccataatgagcattattttggacatcccgaacaaagctttattagccacagagatggcagtgaagaaaca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7287 |
gtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctttattagccac--agatgacagtgaagaaaca |
7371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 313 - 436
Target Start/End: Original strand, 7504 - 7631
Alignment:
| Q |
313 |
atccggtacacaga-aaaaccgtgtggaaatgctacagca---aacagggagaatttacatgatggagtttgtaaattgctttctgacacaagatttatt |
408 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||| ||||| |||||||| ||||||||| |||||| |||||||||||||| ||||||||| |
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| T |
7504 |
atccggtacacacataaaaccgtgtgtaaatgctacagcagcaaacagagagaatttgcatgatggaatttgtatattgctttctgacaatagatttatt |
7603 |
T |
|
| Q |
409 |
atctaacaaatgcttgtagaaaaagttg |
436 |
Q |
| |
|
|| |||||| |||||||||||||||||| |
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| T |
7604 |
atgtaacaagtgcttgtagaaaaagttg |
7631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 530
Target Start/End: Original strand, 7646 - 7743
Alignment:
| Q |
433 |
gttgttgtttagaaaatttacttcacaaagaattttcattacaagggtattaatatctgtgtctaaaaaatgatttttgagccaaaaaagtcgttagc |
530 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||| |||| || |||||||||| | ||||||||||||||| ||| ||| |||||| || ||||| |
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| T |
7646 |
gttgttgtatagaaaatttactttgcaaaaaatttgcatttcaccggtattaatacatctgtctaaaaaatgatctttaagctaaaaaaatctttagc |
7743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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