View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11760_low_10 (Length: 314)
Name: NF11760_low_10
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 10062961 - 10062682
Alignment:
| Q |
19 |
cacagatacctgaagaacatctttcgtggaataagtagtaaaatttcttcatatatagtcttacataaattaaaaattgtgtgatgcccttcttctgacg |
118 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10062961 |
cacatatatctgaagaacatctttcgtggaataagtagcaaaatttcttcatatatagtcttacataaattaaaaattgtgtgatgcccttcttctgacg |
10062862 |
T |
|
| Q |
119 |
cctgtgtgaaattattggttgtaatttttacatagtattagatgtttcgatatagttgatagacaagtttttaaaacaagtttatgagacacaactacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10062861 |
cctgtgtgaaattattggttgtaatttttacatagtattagatgtttcgatatagttgatagacaagtttttaaaacaagtttatgagacacaactacat |
10062762 |
T |
|
| Q |
219 |
cgaagatactgttaacttaacaatcaaacacagtaatataatatttagaaaggtaattattgggatcttcatttggtgat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10062761 |
cgaagatactgttaacttaacaatcaaacacagtaatataatatttagaaaggtaattattgggatcttcatttggtgat |
10062682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University