View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_11 (Length: 308)
Name: NF11760_low_11
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_11 |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 6788972 - 6789140
Alignment:
| Q |
127 |
ggagctagtgttaataaattaattagtggtatccggatgggtataagttatctata--ttatgtatgaacttgtcttttattatgtgagagtgcttgtaa |
224 |
Q |
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| T |
6788972 |
ggagctagtgctaataaattaattagtggtatccgtatgggtataagttatctatatattatgtatgaacttgtcttttattatgtgagagtgcttgtaa |
6789071 |
T |
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| Q |
225 |
gttaattacggtagtacacatgcattgcatgagtaaaagttatctataatggattgtcataatataagt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6789072 |
gttaattacggtagtacacatgcattgcatgagtaaaagttatctataacggattgtcataatataagt |
6789140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 6622122 - 6622234
Alignment:
| Q |
181 |
tattatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaagttatctataatggattg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6622122 |
tattatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaagttacctataatggattg |
6622221 |
T |
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| Q |
281 |
tcataatataagt |
293 |
Q |
| |
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||||||||||||| |
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| T |
6622222 |
tcataatataagt |
6622234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 6596269 - 6596371
Alignment:
| Q |
127 |
ggagctagtgttaataaattaattagtggtatccggatgggtataagttatc--tatattatgtatgaacttgtcttttattatgtgagagtgcttgtaa |
224 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
6596269 |
ggagctagtgctaataaattaattagtggtatccgtatggttataagttatctatatattatgtatgaacttgtcttttgttatatgagagtgcttgtaa |
6596368 |
T |
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| Q |
225 |
gtt |
227 |
Q |
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||| |
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| T |
6596369 |
gtt |
6596371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 6841605 - 6841644
Alignment:
| Q |
180 |
atattatgtatgaacttgtcttttattatgtgagagtgctt |
220 |
Q |
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| T |
6841605 |
atattatgtatcaacttgtcttt-attatgtgagagtgctt |
6841644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 11540 - 11652
Alignment:
| Q |
181 |
tattatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaagttatctataatggattg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11540 |
tattatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaagttaactataatggattg |
11639 |
T |
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| Q |
281 |
tcataatataagt |
293 |
Q |
| |
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||||||||||||| |
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| T |
11640 |
tcataatataagt |
11652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 103 - 1
Alignment:
| Q |
166 |
ggtataagttatctatat--tatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaag |
263 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103 |
ggtataagttatctatatattatgtatgaacttgtcttttattatgtgagagtgcttgtaagttaattacggtagtacacatgcattgcatgagtaaaag |
4 |
T |
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| Q |
264 |
tta |
266 |
Q |
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||| |
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|
| T |
3 |
tta |
1 |
T |
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