View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11760_low_14 (Length: 260)

Name: NF11760_low_14
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11760_low_14
NF11760_low_14
[»] chr5 (4 HSPs)
chr5 (9-94)||(41966065-41966150)
chr5 (144-243)||(37701309-37701406)
chr5 (144-233)||(37439639-37439728)
chr5 (90-123)||(37701257-37701290)
[»] chr3 (1 HSPs)
chr3 (9-92)||(1227450-1227532)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 41966150 - 41966065
Alignment:
Q  9 agagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattataat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966150 agagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattataat 41966065  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 37701309 - 37701406
Alignment:
Q  144 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 243  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37701309 tataagactacattactcaaa--gagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 37701406  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 37439639 - 37439728
Alignment:
Q  144 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattct 233  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37439639 tataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatattttttaaagacttgcatcaaattaattcattct 37439728  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 37701257 - 37701290
Alignment:
Q  90 ataataattttaaaagatataagactactctgtc 123  Q
    ||||||||||||||||||||||||||||||||||    
T  37701257 ataataattttaaaagatataagactactctgtc 37701290  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 1227532 - 1227450
Alignment:
Q  9 agagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattata 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||    
T  1227532 agagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtgttgaa-ccttagtatctagattata 1227450  T

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