View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11760_low_2 (Length: 529)

Name: NF11760_low_2
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11760_low_2
NF11760_low_2
[»] chr4 (6 HSPs)
chr4 (18-524)||(44072912-44073411)
chr4 (219-518)||(44307456-44307761)
chr4 (219-518)||(1369366-1369671)
chr4 (374-518)||(1217243-1217396)
chr4 (219-471)||(28945285-28945543)
chr4 (220-290)||(36858912-36858982)
[»] chr8 (5 HSPs)
chr8 (219-518)||(33373130-33373435)
chr8 (219-345)||(9216155-9216281)
chr8 (229-470)||(42000217-42000464)
chr8 (219-518)||(45093373-45093678)
chr8 (374-413)||(35808286-35808325)
[»] chr7 (8 HSPs)
chr7 (219-416)||(8035643-8035837)
chr7 (219-518)||(38110544-38110849)
chr7 (374-518)||(45033548-45033701)
chr7 (220-416)||(5349927-5350120)
chr7 (374-470)||(2037609-2037706)
chr7 (219-470)||(46045839-46046096)
chr7 (408-518)||(5791330-5791440)
chr7 (229-331)||(3782297-3782399)
[»] chr5 (3 HSPs)
chr5 (219-518)||(14024867-14025172)
chr5 (222-470)||(32386423-32386677)
chr5 (374-518)||(239841-239994)
[»] chr2 (6 HSPs)
chr2 (219-518)||(42865849-42866154)
chr2 (354-518)||(40614919-40615089)
chr2 (219-470)||(24126333-24126590)
chr2 (390-432)||(16473012-16473054)
chr2 (219-278)||(11995851-11995910)
chr2 (374-416)||(11995714-11995756)
[»] chr1 (6 HSPs)
chr1 (219-518)||(6293948-6294253)
chr1 (409-518)||(38168208-38168317)
chr1 (221-345)||(5555935-5556059)
chr1 (374-416)||(16855029-16855071)
chr1 (374-416)||(39476144-39476186)
chr1 (374-415)||(5556085-5556126)
[»] chr3 (5 HSPs)
chr3 (407-506)||(1182630-1182729)
chr3 (408-486)||(3461483-3461561)
chr3 (219-345)||(37503021-37503147)
chr3 (219-300)||(43328795-43328876)
chr3 (443-486)||(43329070-43329113)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 44073411 - 44072912
Alignment:
Q  18 gttttgacctgatcagcatgtgtttcaatatttttgaaatgtcttcttcaaaaaa-gtatttttgaaatgtatgaatactctgtgctttaaggttataag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  44073411 gttttgacctgatcagcatgtgtttcaatatttttgaaatgtcttcttcaaaaaaagtatttttgaaatgtatgaatactctgtgctttaaggttatgag 44073312  T
Q  117 actaaaatcttacgattatattagtatttcaagtataaatgtattct-tttaaaagtaaaatagtatattaagaaagaaatattgagttaatataagttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44073311 actaaaatcttacgattatattagtatttcaagtataaatgtattctctttaaaagtaaaatagtatattaagaaagaaatattgagttaatataagttg 44073212  T
Q  216 gtctagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44073211 gtctagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagct 44073112  T
Q  316 tttgagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaaggtagtgcagattggcttgctaatttcaacatttcgatagatttt 415  Q
    |||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44073111 tttgagtttgagttgggtagtcaaaatta---------ctcatacttggtgtgaaggtagtgcagattggcttgctaatttcaacatttcgatagatttt 44073021  T
Q  416 catattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaatttattagcttt 515  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  44073020 catattttagagactcttcctaatgaacttcagagtcttttgtttaatgctatttttggagtttggatgcccaagaacattcatttaatttgttagcttt 44072921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 44307456 - 44307761
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||| || ||||||| |||| |||||| |||| |  |  |||||| | | |||||    
T  44307456 tagtggagagtgactcaaagatcttggtcgatatgattactgaaaattgcaattttagtggaacgactcctactttggtcgggcgtattcgacaactttt 44307555  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    ||||||||||||| | ||||||||||         | ||||||||||||||||      | ||||||||||||||||||||||||| ||||||||         
T  44307556 gagtttgagttggattgtcaaaatta---------cccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggat 44307646  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| |||||||||   ||| ||| ||||||||||||||| || ||| |||| | || ||||| ||||| | |||| ||| |||||    
T  44307647 tttctagattttcatattctggagactccccctagtgagcttcagagtcttttggttgatgatattatcggggcttgcatgcctaggaacgttcgtttaa 44307746  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  44307747 tttcttagttttctt 44307761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 1369366 - 1369671
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||  |||  |||||| |||| | ||  |||||| | | |||||    
T  1369366 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagtagaactactcctactttggtcaggcgtattcgacaactttt 1369465  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  1369466 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 1369556  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| | ||||||| | ||| ||| |||||||||||||||||| ||| |||||  ||| |||| ||||| | |||| | |||||||    
T  1369557 tttctagattttcatattcttgagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggaacttgcatgcctaggaacgtccatttaa 1369656  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  1369657 tttcttagttttctt 1369671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 518
Target Start/End: Original strand, 1217243 - 1217396
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcga---------tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatg 464  Q
    ||||||||||||||||||||||||| ||||||||         |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| |||    
T  1217243 agtgcagattggcttgctaatttcagcatttcgacggattttttagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatg 1217342  T
Q  465 ctatttttggagcttggatgcccaagaacattcatttaatttattagctttctt 518  Q
     |||||  || ||||| ||||| | |||| | | |||||||| |||| ||||||    
T  1217343 atatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctt 1217396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 471
Target Start/End: Complemental strand, 28945543 - 28945285
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  28945543 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaactttt 28945444  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  28945443 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 28945353  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttt 471  Q
        |||||||||||||| | ||||||| | ||| ||| ||||| |||||||||||| ||| ||||||    
T  28945352 tttttagattttcatattctagagactcctcctagtgagcttcaaagtcttttgtttgatgatatttt 28945285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 36858982 - 36858912
Alignment:
Q  220 agtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctccta 290  Q
    |||||||| |||||||||||| |||||| ||||||||| ||||||||| || ||| ||| |||| ||||||    
T  36858982 agtggagagtgactcaaagattttggtcgatatgattactgaaaattgcaattttggtggaacgactccta 36858912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 33373130 - 33373435
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| ||||||||||||||||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| ||||  |||||| | | |||||    
T  33373130 tagtggagagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggttaggcgtattcgacaactttt 33373229  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| |||||       |||||||||||| |||||||||||| ||||||||         
T  33373230 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacaaaagtgcagattggattgctaatttcagcatttcgacggat 33373320  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||  |||||||| ||||| | |||| | | |||||    
T  33373321 tttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaa 33373420  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  33373421 tttcttagttttctt 33373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 9216155 - 9216281
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    |||| |||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||| |||||| |||| | |||||||||  |||||||||    
T  9216155 tagtagagagtgactcaaagattttggtcgacatgattaatgaaaattgcaattttagtggaacgactcctactttggtcagatgtatttgaaagctttt 9216254  T
Q  319 gagtttgagttgggtagtcaaaattac 345  Q
    |||||||||||||   |||||||||||    
T  9216255 gagtttgagttggaatgtcaaaattac 9216281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 470
Target Start/End: Original strand, 42000217 - 42000464
Alignment:
Q  229 tgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagcttttgagtttgagt 328  Q
    ||||||||||||||||||| | | ||||| ||||||||| || ||||||| ||||||||||| |||| | ||  |||||| | | |||||||||||||||    
T  42000217 tgactcaaagatcttggtcgacaagattactgaaaattgcaattttagtggaacggctcctactttggtcaggcgtattcgacaacttttgagtttgagt 42000316  T
Q  329 tgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcga---------tagatt 413  Q
    |||   ||||||||||         | |||||||||||||||||       ||||||||||||||||||||||||| ||||||||         ||||||    
T  42000317 tggactgtcaaaatta---------cccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggaatttctagatt 42000407  T
Q  414 ttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctattt 470  Q
    |||||||| ||||||||||  ||| ||| ||||| |||||||||||| ||| |||||    
T  42000408 ttcatattctggagactctccctagtgagcttcaaagtcttttgtttgatgatattt 42000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 45093373 - 45093678
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||| | ||||||||||||||||||| | ||||||| ||||||||| || ||||||| |||| |||||| |||| | ||  |||||| | | |||||    
T  45093373 tagtggatagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaactttt 45093472  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||||||||      | ||||||||||||||||| ||||||| ||||||||         
T  45093473 gagtttgagttggactgtcaaaatta---------cccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttcgatggat 45093563  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| || ||||||   ||| ||| |||||||||||||||||| ||| |||||  || ||||| ||||| | |||| | | |||||    
T  45093564 tttctagattttcatattctgaagactccccctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaa 45093663  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  45093664 tttcttagttttctt 45093678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 413
Target Start/End: Original strand, 35808286 - 35808325
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgatagatt 413  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  35808286 agtgcagattggcttgctaattacaacatttcgatggatt 35808325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 219 - 416
Target Start/End: Original strand, 8035643 - 8035837
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| ||||||||||||||||||| | ||||||| ||||||||| || ||||||| |||| |||||| |||| | ||| |||||| | | |||||    
T  8035643 tagtggagagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcagacgtattcgacaactttt 8035742  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcgatagat 412  Q
    |||||||||||||   ||||||||||         | ||||||||||||||||      | ||||||||||||||||||||||||| ||||||||| |||    
T  8035743 gagtttgagttggactgtcaaaatta---------cccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggat 8035833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 219 - 518
Target Start/End: Complemental strand, 38110849 - 38110544
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  38110849 tagtggagagtgactcaaagatattggtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaactttt 38110750  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  38110749 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 38110659  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| |||||||||   ||| ||| |||||||||||||||||| ||| ||||| ||| ||||| ||||| | |||| | | |||||    
T  38110658 tttctagattttcatattctggagactccacctagtgagcttcagagtcttttgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaa 38110559  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  38110558 tttcttagttttctt 38110544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 374 - 518
Target Start/End: Complemental strand, 45033701 - 45033548
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgat---------agattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatg 464  Q
    ||||||||||||||||||||||||| |||||||||         ||||||||||||| |||||||||   |||||||| ||||||||||||||||| |||    
T  45033701 agtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctaatgaatttcagagtcttttgtttgatg 45033602  T
Q  465 ctatttttggagcttggatgcccaagaacattcatttaatttattagctttctt 518  Q
     |||||  |||||||  ||||||| |||||| | |||||||| |||| ||||||    
T  45033601 atatttccggagcttacatgcccaggaacatccgtttaattttttagttttctt 45033548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 416
Target Start/End: Original strand, 5349927 - 5350120
Alignment:
Q  220 agtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagcttttg 319  Q
    |||||||| ||||||||||||||||||| | ||||||| | ||||||| || ||||||| |||| |||||| |||| ||||   ||| | | | ||||||    
T  5349927 agtggagaatgactcaaagatcttggtcgacatgattactaaaaattgaaattttagtggaacgactcctactttggttaggcctatacgacaacttttg 5350026  T
Q  320 agtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcgatagatt 413  Q
    ||||||||||||   ||||||||||         | |||||||||||||||||       ||||||||||||||||||||||||| ||||||||| ||||    
T  5350027 agtttgagttggactgtcaaaatta---------cccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggatt 5350117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 470
Target Start/End: Complemental strand, 2037706 - 2037609
Alignment:
Q  374 agtgcagattggcttgctaatttcaacat-ttcgatagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctattt 470  Q
    |||||| ||||||||||||||||||| |  ||   |||||||||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||    
T  2037706 agtgcaaattggcttgctaatttcaatagattttttagattttcatattttggagactctccctaatgaacttcagagtcatttgtttgatgatattt 2037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 470
Target Start/End: Original strand, 46045839 - 46046096
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||| | |||  |||||| |||| | ||  |||||| | | |||||    
T  46045839 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagcggaactactcctactttggtcaggcgtattcgacaactttt 46045938  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||| ||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  46045939 gagtttgagttggactgtcaaaacta---------cacatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 46046029  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctattt 470  Q
        |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||    
T  46046030 tttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatattt 46046096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 518
Target Start/End: Complemental strand, 5791440 - 5791330
Alignment:
Q  408 tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaattta 507  Q
    ||||||||||||||  ||||||||  |||| ||| |||||||||||||||||| ||| |||||| || ||||| ||| | |||||| | | ||||||||     
T  5791440 tagattttcatattccggagactccctctagtgagcttcagagtcttttgtttgatgatattttcggggcttgcatgtctaagaacgtccgtttaatttc 5791341  T
Q  508 ttagctttctt 518  Q
    |||| ||||||    
T  5791340 ttagttttctt 5791330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 3782297 - 3782399
Alignment:
Q  229 tgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagcttttgagtttgagt 328  Q
    ||||| || ||| |||||||||||||||||||||||||| || ||||||  |||| ||| || |||| | ||| |||||    | |||||||||||||||    
T  3782297 tgacttaatgattttggtcaatatgattattgaaaattgcaattttagtagaacgactcttactttggtcagacgtatttgggaacttttgagtttgagt 3782396  T
Q  329 tgg 331  Q
    |||    
T  3782397 tgg 3782399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 14024867 - 14025172
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  14024867 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaactttt 14024966  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  14024967 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 14025057  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||  || ||||| ||||| |||||| | | |||||    
T  14025058 tttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaagaacgtccgtttaa 14025157  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  14025158 tttcttagttttctt 14025172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 222 - 470
Target Start/End: Original strand, 32386423 - 32386677
Alignment:
Q  222 tggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagcttttgag 321  Q
    |||||| ||||||||||||||||||| | ||||||| ||||||||| || ||||||| |||| |||||| |||| | ||  |||||| | | ||||||||    
T  32386423 tggagagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaacttttgag 32386522  T
Q  322 tttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcga-------- 407  Q
    ||||||||||   ||||||||||         | |||||||||||||||||       ||||| ||||| ||||||||||||| ||||||||            
T  32386523 tttgagttggactgtcaaaatta---------cccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttcgatggatttt 32386613  T
Q  408 -tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctattt 470  Q
     |||||||||||||| |||||||||   ||| ||| |||||||||||||||||| ||| |||||    
T  32386614 ctagattttcatattctggagactccccctagtgagcttcagagtcttttgtttgatgatattt 32386677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 518
Target Start/End: Complemental strand, 239994 - 239841
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgat---------agattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatg 464  Q
    ||||||||||||||||||||||||| |||||| ||         ||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| |||    
T  239994 agtgcagattggcttgctaatttcagcatttcaatggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatg 239895  T
Q  465 ctatttttggagcttggatgcccaagaacattcatttaatttattagctttctt 518  Q
     |||||  |||||||| ||||| | |||| | | |||||||| |||| ||||||    
T  239894 atatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttttctt 239841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 42865849 - 42866154
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  42865849 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaactttt 42865948  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| |||||       ||||||||||||||||||||||||| ||||||||         
T  42865949 gagtttgagttggactgtcaaaatta---------cccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgacggat 42866039  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||  |||||||| ||||| | |||| | | |||||    
T  42866040 tttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaa 42866139  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  42866140 tttcttagttttctt 42866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 354 - 518
Target Start/End: Complemental strand, 40615089 - 40614919
Alignment:
Q  354 ctcatacttggcgtgaaggta------gtgcagattggcttgctaatttcaacatttcgatagattttcatattttggagactctttctaatgaacttca 447  Q
    |||||||||||||||||||||      ||||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||    || ||| |||||    
T  40615089 ctcatacttggcgtgaaggtaacagaagtgcagattggtttgctaatttcagcatttcgatggattttcatattatggagaatccccttagtgagcttca 40614990  T
Q  448 gagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaatttattagctttctt 518  Q
    ||||||||||||| ||| ||||| ||| ||||| ||||| | |||| | | |||||||| |||| ||||||    
T  40614989 gagtcttttgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttttctt 40614919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 470
Target Start/End: Complemental strand, 24126590 - 24126333
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| ||||||||||||||||||| | ||||||| ||||||||| || ||||||  || | |||||| |||| | |   |||||| | | |||||    
T  24126590 tagtggagagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagttgaatgactcctactttggtcaagcgtattcgacaactttt 24126491  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaagg------tagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||| |||||||||||       ||||||||||| ||||||||||||| ||||||||         
T  24126490 gagtttgagttggactgtcaaaatta---------cacatacatggcgtgaaggcaacataagtgcagattgacttgctaatttcagcatttcgatggat 24126400  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctattt 470  Q
        |||||||||||||| |||||||||   ||| ||| |||||||||||||||||| ||| |||||    
T  24126399 tttctagattttcatattctggagactccccctagtgagcttcagagtcttttgtttgatgatattt 24126333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 16473012 - 16473054
Alignment:
Q  390 ctaatttcaacatttcgatagattttcatattttggagactct 432  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  16473012 ctaatttcaacatttcgatagattttcatattttagagactct 16473054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 11995910 - 11995851
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtg 278  Q
    ||||||| | ||||||||||||||||||| | ||||||| ||||||||| || |||||||    
T  11995910 tagtggatagtgactcaaagatcttggtcgacatgattactgaaaattgcaattttagtg 11995851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 11995756 - 11995714
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgatagattttc 416  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||    
T  11995756 agtgcagattgtcttgctaatttcagcatttcgatggattttc 11995714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 219 - 518
Target Start/End: Original strand, 6293948 - 6294253
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  6293948 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaactttt 6294047  T
Q  319 gagtttgagttgggtagtcaaaattactttgattcctcatacttggcgtgaag------gtagtgcagattggcttgctaatttcaacatttcga----- 407  Q
    |||||||||||||   ||||||||||         | ||||||||||| ||||      | ||||||||||||||||||||||||| ||||||||         
T  6294048 gagtttgagttggactgtcaaaatta---------cacatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggat 6294138  T
Q  408 ----tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaa 503  Q
        |||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||  || ||||| ||||| | |||| | | |||||    
T  6294139 tttctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaa 6294238  T
Q  504 tttattagctttctt 518  Q
    ||| |||| ||||||    
T  6294239 tttcttagttttctt 6294253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 518
Target Start/End: Complemental strand, 38168317 - 38168208
Alignment:
Q  409 agattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaatttat 508  Q
    ||||||||||||| ||||||||| | ||| ||| |||||||||||||||||| ||| |||||  || ||||| ||||| | |||| | | |||||||| |    
T  38168317 agattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttct 38168218  T
Q  509 tagctttctt 518  Q
    ||| ||||||    
T  38168217 tagttttctt 38168208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 345
Target Start/End: Original strand, 5555935 - 5556059
Alignment:
Q  221 gtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagcttttga 320  Q
    |||||||  |||| |||||| |||||| ||||||||| ||||||||  || |||||| ||||| |||| |||||  | ||| |||||| | | |||||||    
T  5555935 gtggagagagacttaaagattttggtcgatatgattactgaaaattacaattttagtataacgcctccgatttttgtcagacgtattcgacaacttttga 5556034  T
Q  321 gtttgagttgggtagtcaaaattac 345  Q
    |||||| ||||   |||||||||||    
T  5556035 gtttgatttggactgtcaaaattac 5556059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 16855029 - 16855071
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgatagattttc 416  Q
    ||||||||||||||||||||||||| |||||| || |||||||    
T  16855029 agtgcagattggcttgctaatttcagcatttcaatggattttc 16855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 39476144 - 39476186
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgatagattttc 416  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||    
T  39476144 agtgcagattgtcttgctaatttcagcatttcgatggattttc 39476186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 5556085 - 5556126
Alignment:
Q  374 agtgcagattggcttgctaatttcaacatttcgatagatttt 415  Q
    |||||||| || ||||||||||||| ||||||||||||||||    
T  5556085 agtgcagaatgacttgctaatttcagcatttcgatagatttt 5556126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 506
Target Start/End: Original strand, 1182630 - 1182729
Alignment:
Q  407 atagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcccaagaacattcatttaattt 506  Q
    |||||| ||||||||||||||||||  |||| ||| |||| |||| |||||||| ||| ||||||||| ||||| ||||| |||||| | ||||||||||    
T  1182630 atagatattcatattttggagactccctctagtgagcttctgagtattttgtttgatgatatttttggggcttgcatgcctaagaacgtccatttaattt 1182729  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 486
Target Start/End: Complemental strand, 3461561 - 3461483
Alignment:
Q  408 tagattttcatattttggagactctttctaatgaacttcagagtcttttgtttaatgctatttttggagcttggatgcc 486  Q
    |||||||||||||| |||||| ||   |||||||||||||||||||||||||| ||| ||||||||  ||||| |||||    
T  3461561 tagattttcatattctggagaatccccctaatgaacttcagagtcttttgtttgatgatatttttgaggcttgcatgcc 3461483  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 37503021 - 37503147
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 318  Q
    ||||||||| |||||||||||| |||||| | ||||||| ||||||||| ||  || ||| |||| ||||||  ||| | |   |||||| | | |||||    
T  37503021 tagtggagagtgactcaaagattttggtcgacatgattactgaaaattgcaatgttggtggaacgactcctaccttggtcaagcgtattcgacaactttt 37503120  T
Q  319 gagtttgagttgggtagtcaaaattac 345  Q
    ||||||||||||| | |||||||||||    
T  37503121 gagtttgagttggattgtcaaaattac 37503147  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 43328876 - 43328795
Alignment:
Q  219 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattag 300  Q
    ||||||||| ||||||||||||||||||| | || |||| ||||||||| || ||||||| |||| | | || |||||||||    
T  43328876 tagtggagagtgactcaaagatcttggtcgacataattactgaaaattgcaattttagtggaacgacacttactttgattag 43328795  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 43329113 - 43329070
Alignment:
Q  443 cttcagagtcttttgtttaatgctatttttggagcttggatgcc 486  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||    
T  43329113 cttcagagtcttttgtttgatgatatttttggagcttgcatgcc 43329070  T

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