View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_20 (Length: 227)
Name: NF11760_low_20
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 8550499 - 8550295
Alignment:
| Q |
13 |
cagagagaaactatattagttaaatgaaacgaatgaccattttacaatgtttttgagaaatttgaactccttacttgagattaccatgttttgcagcaaa |
112 |
Q |
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| T |
8550499 |
cagaaagaaactatattagttaaatgaaacgaatgaccattttacaatgtttttgagaaatttgaactccttacttgagattgccatgttttgcagcaaa |
8550400 |
T |
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| Q |
113 |
gatctaagtcatggtggcgtttagtttggaccaatgcaagtaatggtctatgatggaccaattttttccatcattagattagat-atctaactaaatttg |
211 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||| |
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| T |
8550399 |
gatctaaatcatggtggcgtttagtttggaccaacagaagtaatggtctatgatggactaattttttccatcactaaattagatcatctaactaaatttg |
8550300 |
T |
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| Q |
212 |
atgtc |
216 |
Q |
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||||| |
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| T |
8550299 |
atgtc |
8550295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 8537709 - 8537616
Alignment:
| Q |
125 |
ggtggcgtttagtttggaccaatgcaagtaa-tggtctatgatggaccaattttttccatcattagattagat-atctaactaaatttgatgtc |
216 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||| |
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| T |
8537709 |
ggtggcgtttagtttggaccaacggaagtaaatggtctatgatggactatttttttccatcactagattagatcatctgactaaatttgatgtc |
8537616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 38701722 - 38701649
Alignment:
| Q |
123 |
atggtggcgtttagtttggaccaatgcaagtaatggtctatgatggaccaattttttccatcattagattagat |
196 |
Q |
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| T |
38701722 |
atggtggcgtttagtttggaccaatgggaatattggtccatcatggaccaattttttccatcactagattagat |
38701649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 45526789 - 45526749
Alignment:
| Q |
156 |
tggtctatgatggaccaattttttccatcattagattagat |
196 |
Q |
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|||||||||||| |||||||||||| | ||||||||||||| |
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| T |
45526789 |
tggtctatgatgaaccaattttttctaccattagattagat |
45526749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 42141790 - 42141882
Alignment:
| Q |
32 |
ttaaatgaaacgaatgaccattttacaatgtttttgagaaatttgaactccttacttgagattaccatgttttgcagcaaagatctaagtcat |
124 |
Q |
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| T |
42141790 |
ttaaatgacatgaatgaccattttacaatgtttttgagagatttgaactccttacttgagattaccatgttttgcagcaatgatctaagtcat |
42141882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 30151831 - 30151905
Alignment:
| Q |
122 |
catggtggcgtttagtttggaccaatgcaagtaatggtctatgatggaccaattttttccatcattagattagat |
196 |
Q |
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||||||||| ||||| ||||||| || ||||| ||||| |||||||||||||||||| || | ||||||||||| |
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| T |
30151831 |
catggtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagat |
30151905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 7694620 - 7694693
Alignment:
| Q |
123 |
atggtggcgtttagtttggaccaatgcaagtaatggtctatgatggaccaattttttccatcattagattagat |
196 |
Q |
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|||||||| ||||| ||||||| || ||||| ||||| |||||||||||||||||| || | ||||||||||| |
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| T |
7694620 |
atggtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagat |
7694693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 38582177 - 38582217
Alignment:
| Q |
156 |
tggtctatgatggaccaattttttccatcattagattagat |
196 |
Q |
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||||| ||||||||||||||||| ||| ||||||||||||| |
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| T |
38582177 |
tggtccatgatggaccaatttttcccaccattagattagat |
38582217 |
T |
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