View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11760_low_22 (Length: 219)

Name: NF11760_low_22
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11760_low_22
NF11760_low_22
[»] chr6 (6 HSPs)
chr6 (15-201)||(26570766-26570953)
chr6 (124-194)||(1954079-1954149)
chr6 (126-201)||(2940107-2940182)
chr6 (158-203)||(19231956-19232001)
chr6 (146-201)||(10779530-10779585)
chr6 (124-205)||(13394592-13394673)
[»] chr1 (1 HSPs)
chr1 (124-203)||(12486642-12486721)
[»] chr2 (2 HSPs)
chr2 (144-201)||(8781130-8781187)
chr2 (135-201)||(18726012-18726078)
[»] chr4 (1 HSPs)
chr4 (144-201)||(19684945-19685002)
[»] chr3 (5 HSPs)
chr3 (130-201)||(40594142-40594213)
chr3 (143-194)||(25857341-25857392)
chr3 (135-201)||(20398818-20398884)
chr3 (144-201)||(33620421-33620478)
chr3 (124-201)||(41218150-41218227)
[»] chr8 (1 HSPs)
chr8 (128-189)||(4361147-4361208)
[»] chr5 (1 HSPs)
chr5 (147-185)||(19677561-19677599)
[»] chr7 (2 HSPs)
chr7 (144-193)||(5678628-5678677)
chr7 (144-193)||(5703680-5703729)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 26570766 - 26570953
Alignment:
Q  15 caaaggaataatatagttaattaatgtgagaattcaattccattggagtgaaatgagaacaataatgaatgatgagtat-ggctagaggtaatgtgatgt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26570766 caaaagaataatatagttaattaatgtgagaattcaattccattggagtgaaatgagaacaataatgaatgatgagtatgggctagaggtaatgtgatgt 26570865  T
Q  114 agacaagctggctagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtc-ggaacggtgcagattttgcatctggtgtc 201  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| | || |||||||||||| |||| ||||||    
T  26570866 agacaagctagctagcagcatgaatcgaggacgaagt-gcgcgcaagaaaggttcagtctgtaatggtgcagattttacatccggtgtc 26570953  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 1954079 - 1954149
Alignment:
Q  124 gctagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatc 194  Q
    |||||||||| |||||||| | |||||||||||||||||||||| | |||||||||||| |||||||||||    
T  1954079 gctagcagcacgaatcgaggaagaagtggcgcgcaagaaaggttgaatcggaacggtgctgattttgcatc 1954149  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 2940182 - 2940107
Alignment:
Q  126 tagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||||||||| |  ||||||||||||||||||||||||||   ||||||||| | |||||||||| ||||||    
T  2940182 tagcagcatgaatcaaagacgaagtggcgcgcaagaaaggttcaactggaacggtggaaattttgcatccggtgtc 2940107  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 19231956 - 19232001
Alignment:
Q  158 aagaaaggttcagtcggaacggtgcagattttgcatctggtgtctg 203  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  19231956 aagaaaggttcagtcggaacggtgcatattttgcatccggtgtctg 19232001  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 10779530 - 10779585
Alignment:
Q  146 gaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||||||||||||||||||| |   || ||||||||||||||||||||||||    
T  10779530 gaagtggcgcgcaagaaaggttcacttaaaatggtgcagattttgcatctggtgtc 10779585  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 13394673 - 13394592
Alignment:
Q  124 gctagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtctgat 205  Q
    |||||||||| |||||||  |||| ||||| ||||||||||||||||||  || |||||| ||||| |||  ||||||||||    
T  13394673 gctagcagcacgaatcgaagacgatgtggcacgcaagaaaggttcagtcaaaatggtgcatatttttcattcggtgtctgat 13394592  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 12486721 - 12486642
Alignment:
Q  124 gctagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtctg 203  Q
    |||||||||| ||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12486721 gctagcagcacgaatcaaggaagaagtggcgcgcaagaaaggtttagtcggaacggtgcagattttgcatctggtgtctg 12486642  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 8781130 - 8781187
Alignment:
Q  144 acgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8781130 acgaagtggcgcgcaagaaaggttcagtcagaacggtgcagattttgcatctggtgtc 8781187  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 18726078 - 18726012
Alignment:
Q  135 gaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||  ||||||||  | ||||||||||||||||||||  |||| |||||||||||| ||||||    
T  18726078 gaatcgaagacgaagtgatgggcaagaaaggttcagtcggattggtggagattttgcatccggtgtc 18726012  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 19685002 - 19684945
Alignment:
Q  144 acgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  19685002 acgaagtggcgcacaagaaaggttcagtcggaacggtgcaaattttgcatccggtgtc 19684945  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 40594213 - 40594142
Alignment:
Q  130 agcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||| |||||||| | |||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||    
T  40594213 agcacgaatcgaggaagaagcggcacacaagaaaggttcagtcggaacggtgcagattttgcatccggtgtc 40594142  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 25857341 - 25857392
Alignment:
Q  143 aacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatc 194  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  25857341 aacgaagcggtgcgcaagaaaggttcagtcggaacggtgcaaattttgcatc 25857392  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 20398884 - 20398818
Alignment:
Q  135 gaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||  ||||||||||||||||||||||||||||| |||  ||||||||||| |||| ||||||    
T  20398884 gaatcgaagacgaagtggcgcgcaagaaaggttcagtcagaattgtgcagattttacatccggtgtc 20398818  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 33620478 - 33620421
Alignment:
Q  144 acgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    |||||||| ||||||||||||||||| |||||| |||| | ||||| |||| ||||||    
T  33620478 acgaagtgacgcgcaagaaaggttcactcggaatggtgtatattttacatccggtgtc 33620421  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 41218150 - 41218227
Alignment:
Q  124 gctagcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcatctggtgtc 201  Q
    ||||| |||| | |||||| | |||||||||| ||||||| ||||||||  || |||| ||||||||||||| |||||    
T  41218150 gctagaagcacggatcgaggatgaagtggcgcacaagaaatgttcagtcaaaagggtgtagattttgcatctcgtgtc 41218227  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 4361208 - 4361147
Alignment:
Q  128 gcagcatgaatcgagaacgaagtggcgcgcaagaaaggttcagtcggaacggtgcagatttt 189  Q
    |||||| |||||||  ||||||||||||||||||||| |||||||||||  |||||||||||    
T  4361208 gcagcacgaatcgaagacgaagtggcgcgcaagaaagattcagtcggaatagtgcagatttt 4361147  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 19677599 - 19677561
Alignment:
Q  147 aagtggcgcgcaagaaaggttcagtcggaacggtgcaga 185  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  19677599 aagtggcgcgcaagaaagtttcagtcagaacggtgcaga 19677561  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 5678677 - 5678628
Alignment:
Q  144 acgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcat 193  Q
    |||||||||| || ||||||| || ||||||||||| |||||||||||||    
T  5678677 acgaagtggcacgtaagaaagatttagtcggaacggggcagattttgcat 5678628  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 5703729 - 5703680
Alignment:
Q  144 acgaagtggcgcgcaagaaaggttcagtcggaacggtgcagattttgcat 193  Q
    |||||||||| || ||||||| || ||||||||||| |||||||||||||    
T  5703729 acgaagtggcacgtaagaaagatttagtcggaacggggcagattttgcat 5703680  T

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