View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_3 (Length: 522)
Name: NF11760_low_3
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 34257743 - 34257331
Alignment:
| Q |
1 |
tttacaagcttcaattggaattacaaaaacaaacaaaatactaattcccaagttgttggattggtatttactagattttgcaaaggaccttgattcttta |
100 |
Q |
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| T |
34257743 |
tttacaagcttcaattggaattacaaaaacaaacaaaatactaattcccaagttgttggattggtatttactagattttgcaaaggaccttgattcttta |
34257644 |
T |
|
| Q |
101 |
ttggactggatttgtctccaattaccagatgaaataagaaaccaagcagttaaatgccttgaaggaagggaaagagaatctctttcaaagttggtacaaa |
200 |
Q |
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| T |
34257643 |
ttggactggatttgtctccaattaccagatgaaataagaaaccaagcagttaaatgccttgaaggaagggaaagagaatctctttcaaagttggtacaaa |
34257544 |
T |
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| Q |
201 |
tgaagccttatgattttagtttcaggttgcttttacaccaatgaataagtgatatatttgtgtggtggatannnnnnnngtacaatggatagtttacata |
300 |
Q |
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| T |
34257543 |
tgaagccttatgattttagtttcaggttgcttttacaccaatgaataagtgatatattagtgtggtggatattttttttgtacaatggatagtttacata |
34257444 |
T |
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| Q |
301 |
gaaagtatataagccnnnnnnncatgaaataatgtttggaagcaacttaaccctgtgacacatttctgaaaaatcgcatgtatttttggaagtgtacttc |
400 |
Q |
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| T |
34257443 |
gaaagtatataagccaaaaaaacatgaaataatgtttggaagcaacttaaccctatgacacatttctgaaaaatcacatgtatttttggaagtgtacttc |
34257344 |
T |
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| Q |
401 |
cgaatatggacga |
413 |
Q |
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| T |
34257343 |
cgaatatagacga |
34257331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 34257337 - 34257268
Alignment:
| Q |
439 |
tagacgacataaagttaatgaatgaaattcattttcttcaatgattggtgttggtctctattgatgttca |
508 |
Q |
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| T |
34257337 |
tagacgacataaaattcatgaatgaaattcattttcttcaatgattggtgttggtctctattgatgttca |
34257268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 6568030 - 6568208
Alignment:
| Q |
62 |
tggtatttactagattttgcaaaggaccttgattctttattggactggatttgtctccaattaccagatgaaataagaaaccaagcagttaaatgccttg |
161 |
Q |
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| T |
6568030 |
tggtttttacttgactttgcaaaggacttggaatctttgttggattgggtctgccttcagctacctgttgaactgagaaaggaagcagttgaatgccttg |
6568129 |
T |
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| Q |
162 |
aaggaagggaaagagaatctctttcaaagttggtacaaatgaagccttatgattttagtttcaggttgcttttacacca |
240 |
Q |
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| T |
6568130 |
aaagaaggggaaggcagcctctttcacacatggtacatatgacggcctatgatttcagtttcaggttgcttgtacacca |
6568208 |
T |
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