View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_4 (Length: 442)
Name: NF11760_low_4
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 31321772 - 31322201
Alignment:
| Q |
1 |
tatatatgaaatcttgactataaaattaagaacataaa-gtaatattgatgtattaatacaattgaattgcactaactactcgttaaaacgtcaatgtat |
99 |
Q |
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| T |
31321772 |
tatatatgaaatcttgactataaaattaagaacataaaagtaatattgatgtattaatacaattgaattgcactaactactcgttgaaac---aatgtat |
31321868 |
T |
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| Q |
100 |
gaatgaagtaaagaaaatttctagcaataaatgaattcaagctggctgagaaaaagaggacgagcttctaacaacatcaaccgatgtccaagaagatata |
199 |
Q |
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| T |
31321869 |
gaatgaagtaaagaaaatttctggcaataaatgaattcaagctggctgagaaaaagaggacgagcttctagcaacatcaaccgatgtccaagaagatata |
31321968 |
T |
|
| Q |
200 |
ctatgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatc |
299 |
Q |
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| T |
31321969 |
ctatgtacaggggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaaaaatacatc |
31322068 |
T |
|
| Q |
300 |
ttcaacataacacttttcc---taatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattattctgccataacaacaatt |
396 |
Q |
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| T |
31322069 |
ttcaacataacacttttccttattatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattgttctgccataacaacaatt |
31322168 |
T |
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| Q |
397 |
gtaggattggtgttacgaatgagaaccaaaaag |
429 |
Q |
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| T |
31322169 |
gtaggattggtgttacgaatgagaaccaaaaag |
31322201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 102 - 306
Target Start/End: Original strand, 42602016 - 42602213
Alignment:
| Q |
102 |
atgaagtaaagaaaatttctagcaataaatgaattcaagctggctgagaaaaagaggacgagcttctaacaacatcaaccgatgtccaagaagatatact |
201 |
Q |
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|||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||| ||||||| | |||| |||| || ||||||||||| ||||| |
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| T |
42602016 |
atgaagtaaagaaaatctgtggcaatgaatgaattcaagctggctgagaaaaagaggatgagcttccagcaacgtcaatcggtgtccaagaag--atact |
42602113 |
T |
|
| Q |
202 |
atgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatctt |
301 |
Q |
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|||| |||||||| || || |||| | |||| ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||| || |
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| T |
42602114 |
gtgtagagaggttg-----atcaagccaacccaaagtaagtgctgttgctccttcctgctcctgcttctgaacactgtaattatcacaagaatacatttt |
42602208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 430
Target Start/End: Original strand, 42602474 - 42602558
Alignment:
| Q |
346 |
tccaaccttgcctcaatttgttccacttattattctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaagt |
430 |
Q |
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| T |
42602474 |
tccaaccttgcctcattgtgttccgcttcttgctctgccataacaacaattgtaggattggtgctacgaatgaggcccaaaaagt |
42602558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 42601817 - 42601880
Alignment:
| Q |
13 |
cttgactataaaattaagaacataaagtaatattgatgtattaatacaattgaattgcactaactac |
79 |
Q |
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| T |
42601817 |
cttgactataaaattaagaacagaaa---atattgatgtattaatacaaataaattgcactaactac |
42601880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 37497973 - 37498026
Alignment:
| Q |
8 |
gaaatcttgactataaaattaagaacataaagtaatattgatgtattaatacaa |
61 |
Q |
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| T |
37497973 |
gaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaa |
37498026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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