View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_7 (Length: 367)
Name: NF11760_low_7
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 2482353 - 2482682
Alignment:
| Q |
6 |
agcaaaaatatcaacattgatagaccatataccatagatgaaaacacctattaaatattccacacctctaattataaagaaaaatgtctactaaactaat |
105 |
Q |
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| T |
2482353 |
agcaaaaatatcaacattaatagaccatataacatagatgaaaacacctattaaatattccacacctctaatgataaa--aaaatgtctactaaactaat |
2482450 |
T |
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| Q |
106 |
cacttaatcaggtcttagtcttgtttacttcaaaaatgactatggatttaatttgagcattgtagaatatcacacatttatctttcnnnnnnnnnnnnnn |
205 |
Q |
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| T |
2482451 |
cacttaatcaggtcttagtcttgtttacttcaaaaatgactatggatgtaatttgagcattgtagaatatcacacatttatctttc------aaaaaaaa |
2482544 |
T |
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| Q |
206 |
nngaatatcacaaatttaaatttaatatcatatgcagtatgtctgcaccgtttaaaagtacacttctttatacggtgcatgactatattgttgtcaaaat |
305 |
Q |
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||||||||| | ||||||||||||| | |||||| || | |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2482545 |
aagaatatcac------acgtttaatatcatatacggtatgtttgtatcgttcaaaagtacacttctttatatggtgcatgactatattgttgtcaaaat |
2482638 |
T |
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| Q |
306 |
atcattatgtatatctacttctattagtgtctgttgagccttga |
349 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2482639 |
atcattatgtatatctacttttattagtgtctgttgagccttga |
2482682 |
T |
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