View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11760_low_9 (Length: 338)
Name: NF11760_low_9
Description: NF11760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11760_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 42083702 - 42083398
Alignment:
| Q |
15 |
atgaaagggaaaacaacaattaatttagtctttttgaaaaatgaacaaatttagatgtggcatacaaagtcattaaggcaccttgattaacagtgttatg |
114 |
Q |
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| T |
42083702 |
atgaaagagaaagcaacaattaattttgtctctttgaaaaatgaacaaagttagatgtggctgacaaagtcattaaggcactttgattaacggtgttatg |
42083603 |
T |
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| Q |
115 |
tagtattaatgatgttactcaacaatgatgacatgacattggaaacaaacaaaatgatgggagggaaaacttgaattcaaatttgaaattgggattatag |
214 |
Q |
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| T |
42083602 |
tagtattaatgatgttagtcaacaatgatgacatgacattggaaacaaacaaaatgatgagagggaaaactcgaattcaaatttggaattgggattatag |
42083503 |
T |
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| Q |
215 |
cttatatggaccccacacataattaattgaggatttgggagggaaagtgggattaaggttagggttaagttatagcttgacctaattagcttttaaagta |
314 |
Q |
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| T |
42083502 |
cttatatgggccccacacataattaattgaggatttgggagggaaagtgggattaaggttagggttaagttatagcttgacctaattagcttttaaagta |
42083403 |
T |
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| Q |
315 |
agtat |
319 |
Q |
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||||| |
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| T |
42083402 |
agtat |
42083398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 111 - 319
Target Start/End: Complemental strand, 45207562 - 45207376
Alignment:
| Q |
111 |
tatgtagtattaatgatgttactcaacaatgatgacatgacattggaaacaaacaaaatgatgggagggaaaacttgaattcaaatttgaaattgggatt |
210 |
Q |
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| T |
45207562 |
tatgtagtattaatgatgttactcaacaatgatgacatgacattggaaacaaacaaaatgatgggag----------------------aaattgggatt |
45207485 |
T |
|
| Q |
211 |
atagcttatatggaccccacacataattaattgaggatttgggagggaaagtgggattaaggttagggttaagttatagcttgacctaattagcttttaa |
310 |
Q |
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| T |
45207484 |
atagcttatatggacccctcacataattaattgaggatatgggagggaaagtgggattaaggttagggttaagttatagcttgacctaattagcttttaa |
45207385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 45207879 - 45207789
Alignment:
| Q |
15 |
atgaaagggaaaacaacaattaatttagtctttttgaaaaatgaacaaatttagatgtggcatacaaagtcattaaggcaccttgattaac |
105 |
Q |
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| T |
45207879 |
atgaaagggaaaacaacaattaattttgtctctttgaaaaatgaacaaatttagatgtgccatacaaagtcattaaggcaccttgattaac |
45207789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 27174969 - 27175021
Alignment:
| Q |
150 |
acattggaaacaaacaaaatgatgggagggaaaacttgaattcaaatttgaaa |
202 |
Q |
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| T |
27174969 |
acattggaaacaaacaaagtgatgggagggaaaatttgaattcaaatttgaaa |
27175021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 675464 - 675542
Alignment:
| Q |
241 |
ttgaggatttgggagggaaagtgggattaaggttagggttaagttatagcttgacctaattagcttttaaagtaagtat |
319 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
675464 |
ttgaggatttgggagggaaagtgggattaggattagggttaagttatagcttgacctaattagtgtttatagtaagtat |
675542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 28336569 - 28336615
Alignment:
| Q |
273 |
ttagggttaagttatagcttgacctaattagcttttaaagtaagtat |
319 |
Q |
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||||||||||| || ||||||||||||||||||||| ||||||||| |
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| T |
28336569 |
ttagggttaagcaattgcttgacctaattagcttttagagtaagtat |
28336615 |
T |
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