View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11761_high_15 (Length: 327)

Name: NF11761_high_15
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11761_high_15
NF11761_high_15
[»] chr4 (7 HSPs)
chr4 (21-316)||(39869921-39870224)
chr4 (21-317)||(36013609-36013911)
chr4 (21-317)||(47326452-47326748)
chr4 (21-317)||(47341248-47341544)
chr4 (124-166)||(55514161-55514203)
chr4 (126-166)||(38010027-38010067)
chr4 (126-166)||(39112506-39112546)
[»] chr3 (2 HSPs)
chr3 (122-317)||(31598561-31598753)
chr3 (21-95)||(31598451-31598525)
[»] chr6 (1 HSPs)
chr6 (21-299)||(16765351-16765638)
[»] chr5 (1 HSPs)
chr5 (126-166)||(35262798-35262838)
[»] chr1 (1 HSPs)
chr1 (126-166)||(2687137-2687177)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 39869921 - 39870224
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcatatatannnnnnnnnaactggatgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |          |||| ||||     
T  39869921 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatct---tttttttaactagatgt 39870017  T
Q  121 tagta------------attagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgt 208  Q
    |||||            |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||    
T  39870018 tagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagag-gaaaaatacttggtgtgaatttatgttgtttctatgactgt 39870116  T
Q  209 gagcagtgaagaaaatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtg 308  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39870117 gagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtg 39870216  T
Q  309 tggcctat 316  Q
    ||| ||||    
T  39870217 tggtctat 39870224  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 36013609 - 36013911
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcatatatannnnnnnnnaactggatgc 120  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |          |||||||||     
T  36013609 gaaagggaggagagagagcaaaaggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatct---tttttttaactggatgt 36013705  T
Q  121 tagtaa------------ttagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgt 208  Q
    ||||||            ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  36013706 tagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtgaatttgtgttgtttctatgactgt 36013804  T
Q  209 gagcagtgaagaaaatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtg 308  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  36013805 gagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagac--tgtaaaaaagatatggtatgtg 36013902  T
Q  309 tggcctatg 317  Q
    ||| |||||    
T  36013903 tggtctatg 36013911  T

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Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 47326452 - 47326748
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcatatatannnnnnnnnaactggatgc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |          |||||||||     
T  47326452 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaactgcagatct--ttttttttaactggatgt 47326549  T
Q  121 t------------agtaattagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgt 208  Q
    |            ||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  47326550 tagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagag-gaaaaatacttggtgtgaatttgtgttgtttctatgactgt 47326648  T
Q  209 gagcagtgaagaaaatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtg 308  Q
    | ||||||||||||||||||       ||| ||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  47326649 gggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagatatggtatgtg 47326739  T

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Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 47341248 - 47341544
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcatatatannnnnnnnnaactggatgc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |          |||||||||     
T  47341248 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaactgcagatct--ttttttttaactggatgt 47341345  T
Q  121 t------------agtaattagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgt 208  Q
    |            ||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  47341346 tagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagag-gaaaaatacttggtgtgaatttgtgttgtttctatgactgt 47341444  T
Q  209 gagcagtgaagaaaatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtg 308  Q
    | ||||||||||||||||||       ||| ||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  47341445 gggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagatatggtatgtg 47341535  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 55514161 - 55514203
Alignment:
Q  124 taattagtttgaataagtcttattttaggaacaattgggagag 166  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  55514161 taattagtttgaataagtcttattttagaaacaattgggagag 55514203  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 38010027 - 38010067
Alignment:
Q  126 attagtttgaataagtcttattttaggaacaattgggagag 166  Q
    |||| ||||||||||||||||||||| |||| |||||||||    
T  38010027 attattttgaataagtcttattttagaaacagttgggagag 38010067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 39112546 - 39112506
Alignment:
Q  126 attagtttgaataagtcttattttaggaacaattgggagag 166  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  39112546 attagtttgaataagttttattttagaaacagttgggagag 39112506  T

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Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 122 - 317
Target Start/End: Original strand, 31598561 - 31598753
Alignment:
Q  122 agtaattagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgtgagcagtgaagaa 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  31598561 agtaattattttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgtttctatgactgtgagcaatgaagaa 31598659  T
Q  222 aatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtgtggcctatg 317  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  31598660 aatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgt--aaaagatatggtatgtgtggtctatg 31598753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 31598451 - 31598525
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgca 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31598451 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgca 31598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 16765638 - 16765351
Alignment:
Q  21 gaaagggaggagagagagcaaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcatatatannnnnnnnnaactggatgc 120  Q
    ||||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||| |||| || |          |||||||||     
T  16765638 gaaaggggggagagagagcaaagggtaaggatggtggtcccttgatctacttatttatttgaagaaaaaactgcagatct--ttttttttaactggatgt 16765541  T
Q  121 tagtaa------------ttagtttgaataagtcttattttaggaacaattgggagagnnnnnnntacttggtgtgaatttgtgttgtttctatgactgt 208  Q
    ||||||            ||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||| |||    
T  16765540 tagtaaatcagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgtttctatgattgt 16765442  T
Q  209 gagcagtgaagaaaatgggattcatccttctgtgataggggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagata 299  Q
    ||| |||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16765441 gagtagtgaagaaaatgggattcatcctttcatgatagtggatgtgggtgaaattcaatctcatgaggttgaagaaagtgtaaaaaagata 16765351  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 35262798 - 35262838
Alignment:
Q  126 attagtttgaataagtcttattttaggaacaattgggagag 166  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  35262798 attagtttgaataagttttattttagaaacagttgggagag 35262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 2687177 - 2687137
Alignment:
Q  126 attagtttgaataagtcttattttaggaacaattgggagag 166  Q
    |||| ||||||||||||||||||||| |||| |||||||||    
T  2687177 attattttgaataagtcttattttagaaacagttgggagag 2687137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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